Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04182 ATGGCTAGGAGCTGGCTTATTGACAGTGGAGGATTTGCAAAGAAAGTGAAAAACACTACTCTGTCTTCAGCTGATCAGATCAAGGATTGTGGGGCATACCGTGAATGCCCAAACTGTCACCATCATATTGATAACAGTGATGTTTCTACTGAATGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAACAAAATGTGGCCTTGGGAACACAGAGCCACACATGTTTATCAATGAGTTCATCCCAACACTTGAAGAAGACCAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGTGTACATTTCTTTCACAGAACAATCAATGCATATAGTACTGGTCAGCGAAAGCGTCGGAAGATTCAGCATAATGATTTAACTGAAGAGCATGTACGCTGGCATAAGACTGGTAAGACCAAAGCTGTGATAGAAGAAGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGGTGTAAGAAAGGGTCCAAGCCTGATAAATCCAACTGGATAATGCATCAGTACCATCTAGGGACTGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAAATTTTTATCAACAAAAGCGGACGGAGAAAAATGAGAGTACAATGGCTGAAGATTCTGACAACATAATATCGCGAACAAGTCCAAGGACTCCAAAACCAAATCCCCCCAATCCACCTCGCACAGGAAAATTCATTGACTGTGATGATAATATTGATGAAACTGCACTTCTGTCATTTGCCCAGGATGTCAAGTCTATCCCTGGAGAATCACATACCCCACTAACTGATGGTCAGGATCAGGACAATACCGGCAACCCTGCATGGTTGGCTGGTGAATCACAGGCTGTGGAGAATTCTGAATATGATGGCTTGGATGACATATTATTGTGCAACGAGATTTTAGATTCTTCTGCTCCATTAAATGATTCTGGATTGGACCCCTCCACTCTCAATGGCTTTGCTTGCCATGAAAGTGAAATGGCTAGAAATGATAATGTAACTTACGGAACTTCTGTGCTGGATACACTGGAATTGGATACTCCTCCAGATTTTGATCTTTCTGATTTGAATTTTTGTTCTCAGGACAGCATTCTTGATTGGCTGGACTGGTTATGA 1188 0.4133 MARSWLIDSGGFAKKVKNTTLSSADQIKDCGAYRECPNCHHHIDNSDVSTEWPGFPLGVKFDPSDVELLEHLATKCGLGNTEPHMFINEFIPTLEEDQGICYTHPENLPGAKKDGSSVHFFHRTINAYSTGQRKRRKIQHNDLTEEHVRWHKTGKTKAVIEEGVHKGFKKIMVLYIRCKKGSKPDKSNWIMHQYHLGTEEDEKDGEYVVSKNFYQQKRTEKNESTMAEDSDNIISRTSPRTPKPNPPNPPRTGKFIDCDDNIDETALLSFAQDVKSIPGESHTPLTDGQDQDNTGNPAWLAGESQAVENSEYDGLDDILLCNEILDSSAPLNDSGLDPSTLNGFACHESEMARNDNVTYGTSVLDTLELDTPPDFDLSDLNFCSQDSILDWLDWL. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04182 395 MobiDBLite consensus disorder prediction 216 258 - -
Seca1g04182 395 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Seca1g04182 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 308 IPR044799 GO:0003700
Seca1g04182 395 MobiDBLite consensus disorder prediction 282 296 - -
Seca1g04182 395 Gene3D NAC domain 64 221 IPR036093 GO:0003677|GO:0006355
Seca1g04182 395 FunFam NAC domain-containing protein 8 64 219 - -
Seca1g04182 395 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
Seca1g04182 395 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Seca1g04182 395 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04182 Seca-Chr1 130274150 130278774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04182 36 215 NAC Transcription Factor Family AT1G28470 55.676 1.60e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g04182 NAM 8.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04182 - - gmx:100780442 622.468