Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04174 ATGATTAAGCACCGAAATTTAGTCGAACTCTTTGGCTTCTTCTTTGGACCCAACTATGGCTTAATCTCATATGAGTACATCAGAAATGGAAACCTTCGTGATATTTTACATGAAATGGAACCCCCACCACCCTTAAAGTGGAATGTCCGGTTTAAGATAGATGTTGGAATTGCTCAAGGACTAGCATACTTGCATTACGATTGTATCCCACCCATAGTGCACCTAGACATCAAACCAAAGAATATACTTATCAATGCTAATATGGAGCCTCTTATCGCTGGTACCCCTGGCTATATTGCTCCGGGTAATTAG 312 0.4071 MIKHRNLVELFGFFFGPNYGLISYEYIRNGNLRDILHEMEPPPPLKWNVRFKIDVGIAQGLAYLHYDCIPPIVHLDIKPKNILINANMEPLIAGTPGYIAPGN. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04174 103 ProSiteProfiles Protein kinase domain profile. 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04174 103 Pfam Protein kinase domain 2 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04174 103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Seca1g04174 103 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Seca1g04174 103 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 101 - -
Seca1g04174 103 SUPERFAMILY Protein kinase-like (PK-like) 2 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04174 Seca-Chr1 130057738 130058049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04174 2 103 Receptor kinase-like Gene Family AT1G73080 44.262 4.18e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g04174 Pkinase 2.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04174 - - mtr:11435193 142.124