Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04173 ATGACTTTTTGTCTCATTATTGCTGGATTTTCTGATTGCAGATATAAAAATCAAAACGTTGCTGTTAAGATTATTAATAAGGGAGAAACCCCAGAACAGATTTCTAGGAGAGAAGCTCGGTTTGCCAGAGAGATTGCCATGTTATCTAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGAGCCTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTGTTAGGTGGAACATTGCGCAAATATCTGTGGAGTATACGGCCAAAGTGTTTGGATATGCGGGTTGTTCTTGGATTTGCTCTTGATATTGCTCGGGCAATGGAATGCTTACATTCCCATGGGATCATTCATCGTGACCTTAAGCCTGATAACTTGATCTTAACAGCAGATCATAAAACAGTTAAACTTGCTGATTTTGGCCTAGCCAGAGAAGAGTCCGTAACAGAGATGATGACTGCTGAGACAGGGACTTATCGTTGGATGGCCCCTGAACAGCTTTACAGCACAGTCACTCTAAGGCATGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCCTATAGCTTTGCAATTGTATTGTGGGAGCTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTCCAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTGACTTCATGTTGGAAAGAGGATCCAAATGATAGACCCAATTTTAGTCAAATAACACAGATGCTTCTTCAATATCTCACTGTTATCTCACCATCTGAGCCAGTTGTTCCAATGCGAATCGCCTCATCTGAGAATGTTGTCTTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTGGAAGAGATGATTCTGGGGAAACCCCAAAAGTCAATATTGAAGACAGGTCTAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 972 0.4167 MTFCLIIAGFSDCRYKNQNVAVKIINKGETPEQISRREARFAREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWSIRPKCLDMRVVLGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPEQLYSTVTLRHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQITQMLLQYLTVISPSEPVVPMRIASSENVVLPPESPGTSALMAGRDDSGETPKVNIEDRSKGFFFCFNQCY. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04173 323 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04173 323 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Seca1g04173 323 SMART serkin_6 13 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04173 323 Gene3D Transferase(Phosphotransferase) domain 1 9 271 - -
Seca1g04173 323 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 14 257 - -
Seca1g04173 323 PRINTS Tyrosine kinase catalytic domain signature 185 207 IPR001245 GO:0004672|GO:0006468
Seca1g04173 323 PRINTS Tyrosine kinase catalytic domain signature 110 128 IPR001245 GO:0004672|GO:0006468
Seca1g04173 323 PRINTS Tyrosine kinase catalytic domain signature 228 250 IPR001245 GO:0004672|GO:0006468
Seca1g04173 323 PRINTS Tyrosine kinase catalytic domain signature 72 85 IPR001245 GO:0004672|GO:0006468
Seca1g04173 323 CDD STKc_MAP3K-like 14 257 - -
Seca1g04173 323 Pfam Protein tyrosine and serine/threonine kinase 14 257 IPR001245 GO:0004672|GO:0006468
Seca1g04173 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04173 Seca-Chr1 130041977 130045200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04173 8 323 MAP Kinase Kinase Kinase AT5G50180 75.949 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca1g04173 PK_Tyr_Ser-Thr 2.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04173 - - gmx:100809826 568.926