Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04145 ATGGAAAACTCTAATGATGTAGTCATTGGAAATTCAGATGATGATATAGAGCCTTTTCGAGTTGTTAGTTCTGACAATAGTGCAAGTGATGAGGAAAATAATGCTATTGATTCTGATAGTGATAGTGATAGTGATAGTGATAGTGAAAGTAGTAATGATAGTCAGGAAGATATTCCTAATAATAGTGAACAGAAGGTCTCTGGTCAAAATGAGACCTCTTTAATTGAAGTTGGAGGTGAAAAATTTAAAAGAATAGACGAATTGACTTATGAAGATATTTTGGGGCTAGATTTTGGTAGTGAAAAAGAAGCGGGTGATTTTTATGAGACTTATGCAAAAAGCTTGGGTTTTGCTATAAGGAAAGATGATGTAAAGAAGGATGTTAGGGGCCAGGTCCGAATGAGGCAATTTGTTTGCAACAGGGAGGGTCAAAGGAACAAAAAACATTTAATGCGAGTTGATAGAAAAAGGGAACATAGACGATTGACTCGTACTTCATGTCGTACTAAACTCTGTGTTCACTATAATCTGAAGACAGATAGGTGGAAAGTGGTGTCATTTGTGAACACTCATAACCATGAATTATGCCCATCAGGATATAGGCACCTGATTAGTGCATATCGCTGTATTCGGGATTCAGATAAAGCACAGATAGATAGCTTGCATGCACATGGGATAAGAACCTGCCACATAATGGGTTATTTGGTAGCTCAGAGAGGGGGATATGGTAATCTGAGTTTTATGAGAAAGGATGTGTATAATTATCTTGATAGCAAAAATCGCCTTCGGATTAAAGGTGGGGACGCACGTGCTGCGTTAAGTTATCTTCAAGGCAAATCTAATAGTGATCATGTCCTATTTTGCAAGTACATGATTAATGACAAGGATAGATTGAAGACCATTTTTTGGGCAGATGGTGCATGTGTGTCTGACTATTTATGCTTCGGTGATGTTCTAGCCTTTGACACCACCTATAAGAAGAATAAATACCATCATCCATTGGTTATTTTCTCTGGGTGTAATCACCATTCACAAATTGTTATTTTTGGGTTTGCATTGGTTCCAGATGAAACAATTGAGACATACAAGTGGGTCCTTGAAGCTTTTTTGCAGGCAATGTTCTGCAAACATCCAAAATCTGTTGTGACAGATGGAGACGGAGCTATGAGAGAAGCCATTAAGCAAGTGTTTCCCAATGCATCACACAGATTATGTGCTTGGCACTTGCAGAAAAATGCCTGTGAAAATGTTAAGAGTGCTTCTTTTTTACAAGACTTCCAGACAGTTGTGTACTCGAAATTCACCCCAGACAAATTTGAAGAGTATTGGAAGAAGATGGTTTCGAAACATGGATTTGAAAGGAACAATTGGGTTACTAAAACCTATGAGAACAAAGCATTATGGGCCACAACATATTTCCGTGATAAGTTCTTTGGTAGAATAAGAACTACTTCTCAATGTGAGGCTATATATTCATTTATAAAGGCATATGTACGGAAGAGGAGTAGTTTTGTTGAATTAATGCATAATATTGATCAAACCTTGAGAGAGTATAGAAATAATGAATTGATTGCAGATTACAAGTCATTATTCTCAGAACTTGTGTTGACTACATCATTATATAAGATTGAGAAAGATGCAGCCAAAACCTACACTCATGAAATTTTTAAAGAAGTGAAGCGTGATATTGAAAAGGCGGGTGCTCTAAATGTTATTCAGCGAAGTGTAAGTGGTGAGAAGTTGTTGTTCAAGCTTGGTGAGTATTGCAACCGTGATAAAGAAAGAAGTGTTGATTATGATCCTTCAAGGTCAGACTTTAGTTGTGAGTGTAGACTCTTTCAGTCTCGTGGCATTCCATGCTCGCACATTATATGTGTCATGAAAAATGAACATGTTGATCACATTCCTAGGAGTTTGATATTGGCACGGTGGACAAAGGGTGCAAAGAGAAATTTCATGTCGGCTAATATGGTGCAGGAACTACCATCTGATGTGACCAATAGTTCTCAAATTGCTGCCTTATCTGCTGCCTTTAGAAGGTTGTGCAGTGTTACAGAAAAAAAGAGGACAATCTTCAATGATTTGATGGATGATGTATTCAATGTTGTTGAGAAGTATGAGAAGATAGTGGGTGAAGAAAGTTCTGAAAGATCATCAGTTAAAGTTAATGAGGTTCGTGATCCAACTATTGTTAAAACCAAAGGTGCTCCTAAGAAGAAAAAATTTGCCCCAAGGAGGAAGAAGCATTGCTCAAATTGTACTAGTACAGGTCACACGATTAGGAGATGTCCAATGCGCAACGGATTAAATGCTATGAGTAAGAAAGATCTTGAGAAGTTGTCTTCAGACTCTTCTGACACATGCAAAGACCTTGATAGTGTAATGTTTCTTTATTAA 2397 0.3746 MENSNDVVIGNSDDDIEPFRVVSSDNSASDEENNAIDSDSDSDSDSDSESSNDSQEDIPNNSEQKVSGQNETSLIEVGGEKFKRIDELTYEDILGLDFGSEKEAGDFYETYAKSLGFAIRKDDVKKDVRGQVRMRQFVCNREGQRNKKHLMRVDRKREHRRLTRTSCRTKLCVHYNLKTDRWKVVSFVNTHNHELCPSGYRHLISAYRCIRDSDKAQIDSLHAHGIRTCHIMGYLVAQRGGYGNLSFMRKDVYNYLDSKNRLRIKGGDARAALSYLQGKSNSDHVLFCKYMINDKDRLKTIFWADGACVSDYLCFGDVLAFDTTYKKNKYHHPLVIFSGCNHHSQIVIFGFALVPDETIETYKWVLEAFLQAMFCKHPKSVVTDGDGAMREAIKQVFPNASHRLCAWHLQKNACENVKSASFLQDFQTVVYSKFTPDKFEEYWKKMVSKHGFERNNWVTKTYENKALWATTYFRDKFFGRIRTTSQCEAIYSFIKAYVRKRSSFVELMHNIDQTLREYRNNELIADYKSLFSELVLTTSLYKIEKDAAKTYTHEIFKEVKRDIEKAGALNVIQRSVSGEKLLFKLGEYCNRDKERSVDYDPSRSDFSCECRLFQSRGIPCSHIICVMKNEHVDHIPRSLILARWTKGAKRNFMSANMVQELPSDVTNSSQIAALSAAFRRLCSVTEKKRTIFNDLMDDVFNVVEKYEKIVGEESSERSSVKVNEVRDPTIVKTKGAPKKKKFAPRRKKHCSNCTSTGHTIRRCPMRNGLNAMSKKDLEKLSSDSSDTCKDLDSVMFLY. 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04145 798 ProSiteProfiles Zinc finger SWIM-type profile. 593 631 IPR007527 GO:0008270
Seca1g04145 798 SMART 26again6 606 633 IPR006564 GO:0008270
Seca1g04145 798 Pfam MULE transposase domain 318 412 IPR018289 -
Seca1g04145 798 MobiDBLite consensus disorder prediction 53 71 - -
Seca1g04145 798 Pfam FAR1 DNA-binding domain 106 196 IPR004330 -
Seca1g04145 798 MobiDBLite consensus disorder prediction 1 71 - -
Seca1g04145 798 PANTHER OS01G0519700 PROTEIN 86 750 - -
Seca1g04145 798 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04145 Seca-Chr1 129262331 129264727 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g04145 MULE 1.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04145 - - ccaj:109792835 878.241