Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04133 ATGGAATATGCTAAAGGTGGTGAGATTTTTAAGAAGGTGGCCAAAGGAAAGCATAAATCAGATGTTGCACACAAATATTTTAAGCAGCTAGTGAGTGCAGTGGATTTTTGTCACAGTGGAAGTGTATACCATAGAGATATAAAGCATAGAACATTTTGTTGGATGAGAATGAGAACCTGA 180 0.3667 MEYAKGGEIFKKVAKGKHKSDVAHKYFKQLVSAVDFCHSGSVYHRDIKHRTFCWMRMRT. 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04133 59 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 48 - -
Seca1g04133 59 Pfam Protein kinase domain 1 49 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04133 59 Gene3D Transferase(Phosphotransferase) domain 1 4 50 - -
Seca1g04133 59 SUPERFAMILY Protein kinase-like (PK-like) 1 48 IPR011009 -
Seca1g04133 59 ProSiteProfiles Protein kinase domain profile. 1 59 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04133 Seca-Chr1 128818197 128818376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04133 1 48 CBL-interacting serine-threonine protein kinases AT5G58380 75.000 1.70e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca1g04133 Pkinase 6.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04133 - K07198 gmx:100779316 89.3521