Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04131 ATGGATAAGTTTTGTGATGGTTCATGTGTTAACCTAGATGACGATAATAGTGATATTTATGTTAGTGGTGAGGCCTTTGATGTCAATGATAGTGAAGATCAAAATGATTTGGGTGGTCCTAGTGTGGTGGAAGAGTTAGGTAAAATGGATCATCACGATAAAAGAATAGAAGATATGACTCTTGATGACATCCGAAGCATGGAGTTTGCTAGTACAAAGCATGGTGGTATATTTTATAGTGCATATGCAAAGAGTCATGGTTTTGTTATTAGGAAAGATGAGATAATTTTTTTTTGGAATTTTAAGGGCAATGTTATTATGCATCAATTTGTTTGCAACAGAGAGGGGACTAGGAATAAAAAACATTTGATGAGAGTTAATAGGAAAAAAGAACATAGGCCATTAACGTGTGTGGAGTGTCAAGCTATGCTACGAATTGGCTTAGATTATAATACATCTAAATGGAAAGTGGTTTCTTTTGTGGAGACTCACAATGTTAGCTTACCCCTGCTACTTTTGTGCACTTACTACCTGCTTATAGAGGGTTGA 549 0.357 MDKFCDGSCVNLDDDNSDIYVSGEAFDVNDSEDQNDLGGPSVVEELGKMDHHDKRIEDMTLDDIRSMEFASTKHGGIFYSAYAKSHGFVIRKDEIIFFWNFKGNVIMHQFVCNREGTRNKKHLMRVNRKKEHRPLTCVECQAMLRIGLDYNTSKWKVVSFVETHNVSLPLLLLCTYYLLIEG. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04131 182 Pfam FAR1 DNA-binding domain 78 168 IPR004330 -
Seca1g04131 182 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 31 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04131 Seca-Chr1 128812120 128812668 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g04131 FAR1 1.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04131 - - ccaj:109792835 134.035