Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04113 ATGGTTGAGCTTTTGGCTATCATATCAGCTTTCTTCTCAGTCCTGGCATTTGCTTACCTTCTCAAACATCATAACAAACAAAATTCCCCACACAAATTGCCCCATGGAAACATGGGGTGGCCTTTGTTTGGGGAGACTCTTGGCTTCCTCAAGCCTCATAGATCAAACTCCTTAGGAAGATTCTTACAAGAACATTGTTCTAGGTATGGCAAAGTTTTCAAATCACATCTGTTTGGTTCTCCCACCATAGTTTCATGTGACTTTGAGCTCAACTTGTTTATTCTTCAGAATGAAGGGAAACTGTTCCCTGTTGATTACCCCAAGGTAATGCATAACATCTTGGGGAAGTTTTCTCTGCTTCTTGTCACAGGAGATCTTCACAAGAAGCTAAGAAGCACCACTATCAGTTTTGTCAGTGCATCAAAGTCCGCATCCAACTTCCTTAACTGTGTAGAAATGCTTGTAGTGTCAAGGATTAACTCATGGGATCTGAAATGTAAACAAGTTGCTTTCTATAAAGAAGCTAAAAGGTTTTCCATCAATGTTATGCTGAAGCACCTTCTGAATATTAACCCTGATGAGCCACTAGCCACCAAAATCTTAGAAAACTTTGAGAATTACATCAAGGGCTTTGTTTCATTGCCATTAATTATTCCAGGGACTGCATATTCCAAAGCCATGCAGGGCTTGTATCAGGCTAGAAGAAGACTCTCGTTTATTATCAAAGATATTATAATGGAGAGGCGTAAAGGTAACATGGGGCCTGCAGAAGAAGGGGACCTATTGAATTTGATTTTGTCAAAGCAGAACCTATGTGATGAAGAGATGGTGAGCATTGTATTGGACCTCTTGTTTGGGGGTTATGAGACAACTGCTAAACTTCTGTCTATGATTGTCTATTTCCTTGGGGGAGCCCCTATTGCTTTAGAAAGGTTAAAGGAAGAACACCAAGGGATAAGGAAAAGCAAAATGGAGAGGGAGTTACTGAACTGGGAAGACTATAAGAAAATGGAGTTCACACAATATGTGATAAATGAAGCTATGAGATGTGGGAATGTAGTCAAATTTGTGCACAGGAAAGCTGCTCAAGATGTCAAATTCAAAGATTTTGTGATACCAGCAGGGTGGAAGGTTCTTCCTGTCTTGTCAGCTGGACATTTGGATCCCACCCTTTTTGAAAATCCTTTGAAGTTCAATCCCTTCCGGTGGAATGACAATTCGACAAGCAAGAAAGTGGCACCTTTTGGTGGTGGTCCACGACTGTGTCCAGGGGCTGATCTAGCTAAAGTGGAGATAGCATTCTTCCTTCATCATCTTGTCCTTAATTATAGGTGGAAAATGAAGGAAGATGACCACCCACTTGCTTTCCCTTATGTGGAGTTCACGGGAGGGCTGCTATTGGATCTTGAACCCACAGGCACTGCTTTTGGGAAACATACTTGA 1443 0.4151 MVELLAIISAFFSVLAFAYLLKHHNKQNSPHKLPHGNMGWPLFGETLGFLKPHRSNSLGRFLQEHCSRYGKVFKSHLFGSPTIVSCDFELNLFILQNEGKLFPVDYPKVMHNILGKFSLLLVTGDLHKKLRSTTISFVSASKSASNFLNCVEMLVVSRINSWDLKCKQVAFYKEAKRFSINVMLKHLLNINPDEPLATKILENFENYIKGFVSLPLIIPGTAYSKAMQGLYQARRRLSFIIKDIIMERRKGNMGPAEEGDLLNLILSKQNLCDEEMVSIVLDLLFGGYETTAKLLSMIVYFLGGAPIALERLKEEHQGIRKSKMERELLNWEDYKKMEFTQYVINEAMRCGNVVKFVHRKAAQDVKFKDFVIPAGWKVLPVLSAGHLDPTLFENPLKFNPFRWNDNSTSKKVAPFGGGPRLCPGADLAKVEIAFFLHHLVLNYRWKMKEDDHPLAFPYVEFTGGLLLDLEPTGTAFGKHT. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04113 480 PANTHER CYTOCHROME P450 26 30 448 - -
Seca1g04113 480 Pfam Cytochrome P450 34 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 FunFam Cytochrome P450 724B1 28 470 - -
Seca1g04113 480 SUPERFAMILY Cytochrome P450 28 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 Gene3D Cytochrome P450 22 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS E-class P450 group I signature 412 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS E-class P450 group I signature 422 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS E-class P450 group I signature 381 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 415 424 IPR017972 GO:0005506|GO:0016705
Seca1g04113 480 CDD CYP90-like 65 471 - -
Seca1g04113 480 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS P450 superfamily signature 413 422 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04113 480 PRINTS P450 superfamily signature 422 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04113 Seca-Chr1 128115440 128118808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04113 38 367 Cytochrome P450 AT5G14400 54.955 4.54e-129 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04113 K12639 - gmx:100791737 771.541