Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04084 ATGATAACTTTATCCTATCCTGTCACTTATCATGTGTTTGTTGCACCACCGCACATAGGTACAGTAGACACGTTTGCTTCAGAGAGCTTCATCGCCGCCGCGACTGAAGCTTCATCACCGCCGCCACTAAAGCTTAATCGCCGCCGCATCACAGCTCGCAGCCGCAGCCGCATCGCACCTTGCAGTCGCAGGTCGCGTAGGAATATTTTTATAGAGATAGGTGATGATAGCGTTGATTTAACCGCACCAACAAAAGGCTTACATGATCCCGTTGATACGTATGAGGAATGGGTTCCTGAGTGTAATGAAGAAATCAAACCTATAGTTGGCAGAGTCTTTGACACTTTAGAACAAGGAGGGGATTTTTATCAAAGGTATGCACATATTGCTGGTTTTAGTGTACGTAAAGCAACTGAAACGAAAGATAAAAATGGAGAAATAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAGAAAATAGAGGTTGTAACCGAGTTGCTTGTTGATGATAAAAAGTTTCCTAAAACCAAACGAAGAAAACTAACAAGGGAAGGATGTAATGCAAGGATTGTTTTTAAGAGGACACAAAAAGGAAAATGTGAAGTGGTGCAATTTCATGAAGGTCATACACATGCATTAGCTACACCTAAAAAGAAGCAATTCTTAAGATCTGCAAGAGGCATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAAAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGTAGTTATGAAAATATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGGCTTAATCAAAGACTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAACATGAGATGAACCACTCTTTTTACTATGACTATGTGGTTGATAATGAAGGGAGTTTGAAATCTGTCTTTTGGGCAGATGGTCTTTGCCGAAAAAATTACTCTTTATTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTACCTTCCTAGCAGATGAGGAAGTTGAATCATTTGAGTGGTTGTTTGAAACATTCTTGAAAGCAATGGGAGGGCATAAACCTGTTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATAGAGAACGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAACTCCAATGCTGATTTTAACAGTCGTTTTAAGACTTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACATGA 1407 0.3781 MITLSYPVTYHVFVAPPHIGTVDTFASESFIAAATEASSPPPLKLNRRRITARSRSRIAPCSRRSRRNIFIEIGDDSVDLTAPTKGLHDPVDTYEEWVPECNEEIKPIVGRVFDTLEQGGDFYQRYAHIAGFSVRKATETKDKNGEIKWKYFLCSKEGFKLEKIEVVTELLVDDKKFPKTKRRKLTREGCNARIVFKRTQKGKCEVVQFHEGHTHALATPKKKQFLRSARGINNVHKNLLHCYNKANVGPSKVYQLLKEQVGSYENIGCTKRDLQNYSRDLKGLIKDSDAHMFLDNFRRKHEMNHSFYYDYVVDNEGSLKSVFWADGLCRKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGATFLADEEVESFEWLFETFLKAMGGHKPVVIITDQDPAMKIAIENVFTGSSHRFCMWHILKKLSEKVGVSLNSNADFNSRFKTCVWNSESPDEFELT. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04084 468 Pfam FAR1 DNA-binding domain 121 218 IPR004330 -
Seca1g04084 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 102 467 IPR031052 GO:0006355
Seca1g04084 468 Pfam MULE transposase domain 339 433 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04084 Seca-Chr1 126931951 126939497 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g04084 FAR1 1.9e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04084 - - mtr:112420857 501.901