Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04081 ATGGGTCGTACTGGATCTAGAGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATTCTCACTCTACTTTATTTTATTTTCAAAATCCAATTTTACTTTAGTTTGTTTGTACTGCAAGAGTTGATTCATTCAATGTCGAAGTATATCACGGAGATCATTTTGCTCGATCCCAAGTATATTGGTATCCAAATTTCTTATTGGAATTTGGAAATGTAA 273 0.37 MGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLYFIFKIQFYFSLFVLQELIHSMSKYITEIILLDPKYIGIQISYWNLEM. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04081 90 PANTHER 40S RIBOSOMAL PROTEIN S28 1 42 IPR000289 GO:0003735|GO:0005840|GO:0006412
Seca1g04081 90 SUPERFAMILY Nucleic acid-binding proteins 1 42 IPR012340 -
Seca1g04081 90 Gene3D - 1 43 IPR012340 -
Seca1g04081 90 CDD S1_S28E 1 42 IPR000289 GO:0003735|GO:0005840|GO:0006412
Seca1g04081 90 Pfam Ribosomal protein S28e 1 42 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04081 Seca-Chr1 126921166 126921438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04081 1 42 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 88.095 6.11e-20 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04081 K02979 - gmx:100818200 87.0409