Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04074 ATGCTCCCCACTTTCCCCCACCTCTTGAGAAAGAGAATAGCAAAAATGGCTCACCTTTCATGCTTCCTTCTTTTGGTACTCTCTCTTCTGACACCCAACATTGTTTCCTCTTCAGCAGTTCAAGACCCTGAACTAGTTATACAAGATGTACACAGAAGCATCATTGCCTCCAGAAGAAACTTGGGTTATTTATCATGTGGAACAGGTAACCCCATTGATGATTGCTGGCGCTGTGACCCAAATTGGGAAAGGAACCGTCAAAGACTAGCAGATTGTGCCATTGGGTTTGGCAAAGATGCCATTGGAGGAAGAAATGGTCAAATCTACATTGTCACTGACTCTGGTGATGATGACCCAGTGAACCCCAAGCCAGGAACTTTGAGACATGCTGTTATACAGGATGAGCCATTGTGGATAATTTTCAAGAGGGACATGGTGATTACCCTTAAACAAGAGCTTGTGATGAACTCTTTCAAGACAATTGATGGAAGGGGTGTTAGTGTTCACATTGCTGGTGGTGGATGCATTACCATACATTATGTGAGTAACATCATCATCCATGGCATTCACATCCATGATTGTAAGCCTACTGGGCATGGGTATATAAGAGACTCCCCTCGCCATTATGGATGGTGGACTATTTCGGATGGTGATGGTGTGTCTATCTTTAATTCAAGGCATATATGGGTTGACCATTGCTCCTTGTCTAACTGTCATGATGGTCTCATTGATGCCATCCATGGTTCCACAGCTATCACCATCTCTAACAACTACATGACCCATCATAACAAGGTCATGCTTTTGGGCCACAGTGATTCCTACACACAGGACAAGGACATGCAGGTCACTATAGCCTTCAATCATTTTGGAGAAGGCCTTGTCCAAAGATTGCCAAGGTGTAGACATGGGTATTTTCATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCCATTGGTGGGAGTGCTAACCCAACCATTATTAGCCAAGGGAACAGGTTTCTAGCACCAGATAACAGGTTTAGCAAGGAGGTAACAAAGCATGAGAATGCTCAACAGAATGAATGGATGCACTGGAACTGGAGGTCAGAGGGGGACATGTTCTTGAATGGAGCATACTTCACACAATCTGGTGCAGGTGCTACTTTTGCTTATGCCAGAGCAACAAGTCTGAGTGTGAGACCATCTTCTCTGGTTGGTTCCATGACAGTGACTGCAGGTGCACTCAACTGCAGGAAAGGCACACGTTGCTGA 1257 0.4471 MLPTFPHLLRKRIAKMAHLSCFLLLVLSLLTPNIVSSSAVQDPELVIQDVHRSIIASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGQIYIVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGVSVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGHGYIRDSPRHYGWWTISDGDGVSIFNSRHIWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRLPRCRHGYFHVVNNDYTHWEMYAIGGSANPTIISQGNRFLAPDNRFSKEVTKHENAQQNEWMHWNWRSEGDMFLNGAYFTQSGAGATFAYARATSLSVRPSSLVGSMTVTAGALNCRKGTRC. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04074 418 Pfam Pectate lyase 151 335 IPR002022 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Seca1g04074 418 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Seca1g04074 418 PANTHER PECTATE LYASE 18-RELATED 39 416 IPR045032 GO:0030570
Seca1g04074 418 FunFam Pectate lyase 69 411 - -
Seca1g04074 418 Gene3D - 69 411 IPR012334 -
Seca1g04074 418 SMART amb_all 144 341 IPR002022 -
Seca1g04074 418 SUPERFAMILY Pectin lyase-like 58 412 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04074 Seca-Chr1 126415747 126417866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04074 10 418 Polysaccharide Lyase AT5G63180 71.913 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04074 K01728 - gmx:100794814 736.487