Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04073 ATGTGCAACAAAAACAGTCCTCCTCCAATTCCAACTCCAACTCCTTCACAAAACTCTAAAATGAAGAAAACCAAGCAACATTTCTCTTCCTCATCTTCCTCTTCCTCTTCTTCTCTTAAACGCAGAAACAGAACCAAAACCAGAAAGCCCAAGTATTTAAGTCTCCGCCTTCAATTATCCCAAAACCAAAACCAACCCAAAAAAACAACCAACCAACAACCACCAAACAAACCCCAACAACAACAGCCTCAACTGAATCTCTTCCCCCTCCACCCTGAAAACCTGATGGAGGAAAAGGACATGCACGAGGAGAACAACGTGGCGCTACTATTCAGTTCCGACGGTGGCGCCACGCTCAACGGCCTCCTCGAAGACGAATCCACCACAACCGCTGCCACGTCAGAGGAAGGATCGATGTCGGCGCTGACGTGTCCTGCGTTGGATGGAAACTGGCTAGTGAGGAAAGCGATGAGGAAGAGTAGCAAAGAGAGGGAAGTTGAAGAGAGGTGGGTTTGTTACTCGGAAGTGGTGGAGGAGAAGAAGGAGCTTATGGAGGAAGTTACGAGTTATTGTTGTGCCACAACGGGGGATCCGTTGAGGAGAACGACGTCGTTTGCGTCGTTGTCGTTGAAGCTGGATCACGAGGGGATATTGAATGCTTGGTCTGATAAAGGCTCTCTTTATGTAGCAGAGGATGAGGCCCCACAGATTGTTCCTGATTTGTTCAATGCTCACCTTCTTCATAATGCATTTCCTCCCAATAATGTCACATGGGATGGTTGGGGGAGTGATGCTGTTGGGAACACATGGAAAGTTCCTGAAGATTGTGGAGCTAACAAGTCGAAGGTGAAAGAAGAAATGGGTTGGAAGTTGGGGCAGAGAGAGGCAAGTGTGCTGAGATACAAGGAGAAGAGGCAAAGCAGGCTCTTTGCTAAGAGGATCCGTTATGAAGTACGAAAGCTGAATGCTGAGAAGCGACCTAGGATGAAGGGACGATTTGTGAAGAGGGAATAA 1014 0.4773 MCNKNSPPPIPTPTPSQNSKMKKTKQHFSSSSSSSSSSLKRRNRTKTRKPKYLSLRLQLSQNQNQPKKTTNQQPPNKPQQQQPQLNLFPLHPENLMEEKDMHEENNVALLFSSDGGATLNGLLEDESTTTAATSEEGSMSALTCPALDGNWLVRKAMRKSSKEREVEERWVCYSEVVEEKKELMEEVTSYCCATTGDPLRRTTSFASLSLKLDHEGILNAWSDKGSLYVAEDEAPQIVPDLFNAHLLHNAFPPNNVTWDGWGSDAVGNTWKVPEDCGANKSKVKEEMGWKLGQREASVLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKGRFVKRE. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04073 337 Pfam CCT motif 294 336 IPR010402 GO:0005515
Seca1g04073 337 MobiDBLite consensus disorder prediction 1 15 - -
Seca1g04073 337 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Seca1g04073 337 MobiDBLite consensus disorder prediction 1 84 - -
Seca1g04073 337 MobiDBLite consensus disorder prediction 16 40 - -
Seca1g04073 337 MobiDBLite consensus disorder prediction 54 84 - -
Seca1g04073 337 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 18 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04073 Seca-Chr1 126295941 126302327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04073 207 336 C2C2-CO-like Transcription Factor Family AT1G73870 43.077 4.71e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g04073 CCT 5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04073 - - gmx:100798231 357.451