Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04071 ATGGCTTCCCATTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTACGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGGTAAGTTTTATTTACATTATGTTTAA 450 0.3689 MASHYDLICNVNGGSEHKIWRIKVRVIRLRRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVGKFYLHYV. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04071 149 CDD RPA1_DBD_A_like 21 109 - -
Seca1g04071 149 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Seca1g04071 149 SUPERFAMILY Nucleic acid-binding proteins 10 115 IPR012340 -
Seca1g04071 149 Coils Coil 149 149 - -
Seca1g04071 149 Gene3D - 8 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04071 Seca-Chr1 126231148 126231685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04071 20 132 Core DNA Replication Machinery Family AT2G06510 29.661 4.34e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04071 - - adu:110274503 164.466