Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04053 ATGGGAAGACAACCTTGCTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAACTTCATCCTCAACAATGGCATACATTGCTGGAGAATGGTTCCCAAACTTGCAGGTTATGGTGAAGGTCTTCTAAGATGTGGAAAAAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACTGAAATGGAAGAGGATCAAATTATACAATTACATGCACGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTGAAGCTCCTTGGTGTGGACCCTGTGACCCACAAACCAATTGAGCAAAAGGAACACACTGATGAGGATGAAAAAAGTAAGACCAACCTACTAGAGCCAAATATTTCTATAGGCTCTGAAGAAAATGTGGAGATTAAATCCTTGGACAGTGATGGCACCAAGGAAATTGTGACAAAAACAGAAGGGAAAAGAGAAGAGAACAATGTCAGTTGGGATGATACCACTGAACTTCTAAACAATTTTGAAATGCTATGCTCACAATTGGACTTGGAATCATGGATGAGCCAAGAAACAAACACTGCTAGTACTAATTCATTTTGTAGTTCTTCTGTCTCTCTTGATGATACTAGCCACCTTTCAATGGGTGAATCCCCTTACCTTCAGGAAAATTCCTTACAGCAATGGGTTGATAGTATGGATTCAAATCTCTCATGGGATGGCTTCAATCCTTTTGACCAAGACATTTTCTTCCAGGAAAATAGGGAATAA 846 0.4066 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGYGEGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGVDPVTHKPIEQKEHTDEDEKSKTNLLEPNISIGSEENVEIKSLDSDGTKEIVTKTEGKREENNVSWDDTTELLNNFEMLCSQLDLESWMSQETNTASTNSFCSSSVSLDDTSHLSMGESPYLQENSLQQWVDSMDSNLSWDGFNPFDQDIFFQENRE. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04053 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Seca1g04053 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Seca1g04053 281 SMART sant 70 118 IPR001005 -
Seca1g04053 281 SMART sant 13 67 IPR001005 -
Seca1g04053 281 Gene3D - 73 151 - -
Seca1g04053 281 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca1g04053 281 CDD SANT 74 114 IPR001005 -
Seca1g04053 281 Gene3D - 11 71 - -
Seca1g04053 281 Pfam Myb-like DNA-binding domain 14 65 IPR001005 -
Seca1g04053 281 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Seca1g04053 281 FunFam MYB-related transcription factor 13 70 - -
Seca1g04053 281 CDD SANT 16 65 IPR001005 -
Seca1g04053 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca1g04053 281 ProSiteProfiles Myb-like domain profile. 9 65 IPR001005 -
Seca1g04053 281 SUPERFAMILY Homeodomain-like 11 112 IPR009057 -
Seca1g04053 281 FunFam MYB transcription factor 72 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04053 Seca-Chr1 125651274 125652839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04053 1 150 MYB Transcription Factor Family AT5G16600 70.000 1.88e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g04053 Myb_DNA-binding 2.3e-10 CL0123