Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04049 ATGGTGGTGAGTGAAGAACAAAAACGCAGCCCCATAAACCAAAAGAACCCGTTGACACAGTCAAACTCAAATAGCCAAAACGTGGCTACCCTTTTCAGTCCAAGGTTCAAATCTGCGGCTGCCATGGCCGGTTGGGACGAAGAAGCGCTGTTACTGGCCAGTCTCATCGTTGAAGACACGCCAGAAAGAGATCGAAAGTGTAGGAAGCGCACTGTTTTGACCTCCAAGACCCCACCCACCAATTCAGCAAGGAAACGCAGAGGTCAGAGGAGTCCACAACCAATCACTGTACCTGTTATTAATCTTGATGAAGAAGAAACTCCTACAAAAGATAGTGGGAAAAAGAAGAAGGAAAAGAAGACTTGCGTCAATGAAGGAACTAAAGTAGGAGGAAATGAATTGCCTGAGCAGAAGAGTTCTGGTGTCTCTTCCACCAGTTCTGCTCTTCCCTGCATTGATAAACTCAGGGAGGAGCTTTCCTGCGCAATTTGTTTGGAGATGTGCTATGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTATAAAATGTCTGCGATCTGCTGCAGACAAGTGTGGCAAAAAATGCCCCAAATGCAGGCAATTTATGAGCAATGGACGAGCTTGCACTGTGAACACAGTTTTATGGAATACAATACAGCTCCTGTTTCCTCAGGAAGTTGAAGCAAGGAAAGCAGCTGGTGCCTTGAATAGTCGACAGAGTCAGTGTGTGATTCCAGAAAAAGCATTTTATAGTAACCTAAGGAATGGAAGCACACAGACTGGAGCATCAAGCAGAAGTATGAGTTCAAGGAGAGGGGCAACAACACAGGAGGATGAGGATTCTGCATTTGCTAGAAGGTTACAGAGAGAAATTGATGGACAAAACCACCTGGGAACAACAAGGGCTCAGAGTAATTCAAGGAATCAAACCACATCATCATTATCTGTAAGAATGAGGACAAGAAGATTGGTTTCTAGCCAAGATGAGGATGCTGCTTTGGCTCTAAGGTTGCAAAGAGAAGAGTTTATGCAAGTTCAGTCCAGCAGACCCTCCTCTTCCTCATTAGCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGTATTAGGGATAGAAGAACATAA 1137 0.4485 MVVSEEQKRSPINQKNPLTQSNSNSQNVATLFSPRFKSAAAMAGWDEEALLLASLIVEDTPERDRKCRKRTVLTSKTPPTNSARKRRGQRSPQPITVPVINLDEEETPTKDSGKKKKEKKTCVNEGTKVGGNELPEQKSSGVSSTSSALPCIDKLREELSCAICLEMCYEPSTTPCGHSFCIKCLRSAADKCGKKCPKCRQFMSNGRACTVNTVLWNTIQLLFPQEVEARKAAGALNSRQSQCVIPEKAFYSNLRNGSTQTGASSRSMSSRRGATTQEDEDSAFARRLQREIDGQNHLGTTRAQSNSRNQTTSSLSVRMRTRRLVSSQDEDAALALRLQREEFMQVQSSRPSSSSLARANLRAMASRAMNLRIRDRRT. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04049 378 MobiDBLite consensus disorder prediction 73 89 - -
Seca1g04049 378 PANTHER UNCHARACTERIZED 324 370 - -
Seca1g04049 378 ProSiteProfiles Zinc finger RING-type profile. 161 200 IPR001841 -
Seca1g04049 378 MobiDBLite consensus disorder prediction 255 272 - -
Seca1g04049 378 SMART ring_2 161 199 IPR001841 -
Seca1g04049 378 MobiDBLite consensus disorder prediction 104 124 - -
Seca1g04049 378 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 - -
Seca1g04049 378 MobiDBLite consensus disorder prediction 255 317 - -
Seca1g04049 378 MobiDBLite consensus disorder prediction 1 26 - -
Seca1g04049 378 MobiDBLite consensus disorder prediction 7 26 - -
Seca1g04049 378 MobiDBLite consensus disorder prediction 61 145 - -
Seca1g04049 378 SUPERFAMILY RING/U-box 153 224 - -
Seca1g04049 378 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Seca1g04049 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 230 IPR013083 -
Seca1g04049 378 MobiDBLite consensus disorder prediction 294 317 - -
Seca1g04049 378 MobiDBLite consensus disorder prediction 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04049 Seca-Chr1 125418233 125420461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04049 153 200 C2H2 Transcription Factor Family AT5G39550 44.898 1.30e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04049 - - gmx:102666585 440.269