Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04037 ATGACTACAATACCAAGTATTGGCATGGAATTTGATAGTGTAGATGAAGGTTGGGAATTTTGGCGTGAATATGGTAAAAAAACCGGCTTTGGTGTTAGAAAACAATACTTCAACAAAAGGAAGAAAGATGGCTCGATTAGATCATGCAGGTTTGTTTGTTGCAAGGAAGGTAAGCGAACATCAGACAAGAGATCTTTTTTAGTTAAGAATCCTAGGGCTGAAACAAGAACTGAGTGCAACGCAAGAATAGCTCTTAGTAAAAAGAATGGGAAGTTTGTCATCCATGAGTTCATAGAGGACCATAACCACCCTTTACAACTTGTAGAAACAACACATATGTTAGCATCACACCGTAAAATTTCTGAAGCTCAAGCATATGAGATTGAAATGGCAGAAGACTCTGGATTGATGCAAAAGGCCTCATTTCAACTTATGAGCACACATGTAGGAGGTAGAGCTAATCTCGGATATACAAGGTTGGATGCTAAGAACTATCTCAAAGTAAGAAGACAACGTAGTATGGTGTATGGGGAAGTCGGTGGTCTTATGCAGTATTTTCAGCACCAATTGTTGGAGAATCCCTCATTTTACCATGCATATCAAATGGACTGCGATGAACAAATCACAAATGTATTTTGGGCTGATGCAAAAATGATCTTGGATTATGGATATTTTGGTGATGTGGTCTCTTTGGATACAACCTATTGCACTAATCATGCTAATAGACCTTTGGCTTTGTTTTCAGGCTTTAATCAATACAGGGGTGTAGACATTTTTGGGGCTGCTCTATTATATGATGAAACAAGTGAATCATTCAAATGGTTATTCGAAACATTTCTTAAAGCACATGGGAATAAAAGGCCTCGAACTTTGTTCACTGACCAATGTCAAGCGATGGCCAAAGCACTAGCTGAGGTGATGCCAGAGACTCGACATGGGTTATGTACATGGCACTTGATGCAAAATGGGATTAAGCACCTTGGTAATTTGATGAAGAAAGGGAGCCATTTCTTAACTGAGTTTAAGAAGTGCATGTATGATTATAACCAAGAAATGAAGTTTGAGGCAGCTTGGAGCAAATTGGTTGCAGAATTTAATGTCAGTGAGAATAATTGGGTGAAATCAATGTATGAAATAAAGGAAAAATGGGCAGCATGTTACATGAAGGAAGCATTCACCCTAGGGATGCGAAGCACTCAACTTAGTGAGAGCTTGAACTCAGATTTTAAGGCATGCATGACACCTAATATCAATGTCATTCAATTCTTCAAGCACTTTGAGAGAGTGGTTGAGGAGAAACGATACAACGAGTTAGTTTGTGAATATGAGTCTCGACATAAACTTGCAAAGTTAACATACAGACATTCACCAATTCTAGTGCAACTCGCACAAGTATACACACCAAAAATTTTTGACATGTTCCATGATGAGTTTGGGTTATTCTTAGCAGCTTGCATATGTGAAAGAAATGTATCTCAACTTCCATTTGAATATGTTATCACCTTGTTCAATGAGGAAGGAGAATGGAGAGTGTTATTTGATCCTATACACTTCTCCGTATCATGCACTTGTAGGAAATTTGAGAGTTTTGGGATACTTTGTTGCCATGCGTTAAAGGTTTTTGAGGCAAATGATGTTAAACTTGTCCCCGAACAATACATCCTCAAGAGGTGGACAAGAGAAGCACGAAGTGGTATTATACATGATGTAAGGGGGAATGAGGTTGTGGAAGATCCTAGACTATCTAGTACGCAGAGATATAAACAAGTCTGCCAAAAAATGATTAGATTGGCAGCAGAGGTGTCAACTTCTGAAAAACTTTCGCAGCTTGTGGATGAAGGAATAGATGGGTTGTGTAAGAAGGTGAGGGAGGTTCGATTACAAGAAAAAATAATGATCAATGAAGAAGGTGATGTTCCAACACTGACAACTAAATCTATGACACAAGTAAAGGGTTTCAAGAAGCGGTTCGGGTTAAAAAGACATAAACGAATAAAGAGTTGGGTTGAACTTCAATCTAAACACAGAAAAAGAGCTCCAAATTTAAGACCTTTACCAAGTCAACAATTTGAGGATATTGAATCTGTTAGTCAAATGGACTGTGGAACATCCAGTTTGGCAAACCAAGCACATGAGTTCTCACAAACATCTGGAAATTGTTTTAGTTTCACTAGATTATTGATGGAGTCACTTAATGAGGATTGA 2205 0.3823 MTTIPSIGMEFDSVDEGWEFWREYGKKTGFGVRKQYFNKRKKDGSIRSCRFVCCKEGKRTSDKRSFLVKNPRAETRTECNARIALSKKNGKFVIHEFIEDHNHPLQLVETTHMLASHRKISEAQAYEIEMAEDSGLMQKASFQLMSTHVGGRANLGYTRLDAKNYLKVRRQRSMVYGEVGGLMQYFQHQLLENPSFYHAYQMDCDEQITNVFWADAKMILDYGYFGDVVSLDTTYCTNHANRPLALFSGFNQYRGVDIFGAALLYDETSESFKWLFETFLKAHGNKRPRTLFTDQCQAMAKALAEVMPETRHGLCTWHLMQNGIKHLGNLMKKGSHFLTEFKKCMYDYNQEMKFEAAWSKLVAEFNVSENNWVKSMYEIKEKWAACYMKEAFTLGMRSTQLSESLNSDFKACMTPNINVIQFFKHFERVVEEKRYNELVCEYESRHKLAKLTYRHSPILVQLAQVYTPKIFDMFHDEFGLFLAACICERNVSQLPFEYVITLFNEEGEWRVLFDPIHFSVSCTCRKFESFGILCCHALKVFEANDVKLVPEQYILKRWTREARSGIIHDVRGNEVVEDPRLSSTQRYKQVCQKMIRLAAEVSTSEKLSQLVDEGIDGLCKKVREVRLQEKIMINEEGDVPTLTTKSMTQVKGFKKRFGLKRHKRIKSWVELQSKHRKRAPNLRPLPSQQFEDIESVSQMDCGTSSLANQAHEFSQTSGNCFSFTRLLMESLNED. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04037 734 Pfam SWIM zinc finger 521 543 IPR007527 GO:0008270
Seca1g04037 734 Pfam MULE transposase domain 228 322 IPR018289 -
Seca1g04037 734 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 623 IPR031052 GO:0006355
Seca1g04037 734 SMART 26again6 520 547 IPR006564 GO:0008270
Seca1g04037 734 Pfam FAR1 DNA-binding domain 19 106 IPR004330 -
Seca1g04037 734 ProSiteProfiles Zinc finger SWIM-type profile. 498 545 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04037 Seca-Chr1 123904503 123906866 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g04037 MULE 5.3e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04037 - - smil:130990021 872.078