Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04029 ATGAGAGAGAGGGGAAAGGGACGGAGGCAATGGCAGCTGGCATGGTGGGACCTTGTGGGAACGCAGGATGTCAAAACAGGGAATTCGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCCGAGGTGTGTATATGCAATTCCAAGTCGCCCTTTGCATTACACTGATGAGATGGACGTGGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGAGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATACATTTGAACGGTCTGAAATTCTTACCGGTGAAAATAAATTACCCATTCAAGGATCCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTCGTAGGAACTCGTTGCAGGTTAGCTGGTGCAAATTTGAAGTGACTGTCGACTCTCCTAAAGACATAAGGATTTCTTCAAATTCCTCAAAATTCACTTTCGAGATTCCTCCTGTGGTTGTCACGGCCATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAAATTGTATCAGCATCAGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAGCTTGATGGGAATATATTTCCACTGGGATTCAGTAAGGAGGCTACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTGATGTTAGAATTACACAAGTTGGATAGAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGTCCATCATGCTTTTCAAAACAAAAGTCTTCTGCATTCTATCCGATTTGCATTTTACACTTTGAAGGGCCTGCAGCACCTAAAACACCCAATAAAAAACTTGTGCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGATAGAAAAGCAAAGTTTTTGGTTCTGGAGCTGATCCTGGTTAGTTATGCTTTAACTCACCTCGCAAAAACACAGCTGAACAGGTTTCGGAAGGAAGTTGCTCCACATGACATTCCAAAAATGTTCCAAACAACAAAATCTCTAATGGAGCTTATTGATTATGGTGAAACGGATGCCTGGTTGTTTATGGAACTCATGTTTCATCTGAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTAGAATATTTATTATTGTATGCTTTCCATGCAAAGAAATATATTGTTCCAGACAAGTTTACAAATCATGCAAAAGAAGCAAAATTGACCAAACGTAGAGTACATGGTGTTGATGATAGCAAGTTTGATGAAGCAAAAATTGATGATGCAAACTACAATAATGATGCTTCTGAACGTGATCATAAGAAAAACAAAAAGGCTTCTTCCTATGCCGGGGGACTAGTTTTAGAGCCAAAAAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACTGTTAG 1638 0.4023 MRERGKGRRQWQLAWWDLVGTQDVKTGNSYQSCCVVVKNMPRCVYAIPSRPLHYTDEMDVVSDIKNEIAKHLVDLSVSTFSMAPVKRKYTFERSEILTGENKLPIQGSSTSSRPQRRKFLCSRRNSLQVSWCKFEVTVDSPKDIRISSNSSKFTFEIPPVVVTAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEATDRNIKAGSNVLCVESSERALLNRLMLELHKLDRVMFLLDIIFLDLTWMFFSTDPSPSCFSKQKSSAFYPICILHFEGPAAPKTPNKKLVQACKVPSSMWSKLGRLNRSTMPKLDRKAKFLVLELILVSYALTHLAKTQLNRFRKEVAPHDIPKMFQTTKSLMELIDYGETDAWLFMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLYAFHAKKYIVPDKFTNHAKEAKLTKRRVHGVDDSKFDEAKIDDANYNNDASERDHKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYC. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04029 545 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 24 109 - -
Seca1g04029 545 SUPERFAMILY DNA/RNA polymerases 439 544 IPR043502 -
Seca1g04029 545 Pfam DNA polymerase family B 429 544 IPR006134 GO:0000166|GO:0003677
Seca1g04029 545 SUPERFAMILY Ribonuclease H-like 28 458 IPR012337 -
Seca1g04029 545 Gene3D - 18 40 - -
Seca1g04029 545 Gene3D - 158 268 IPR036397 GO:0003676
Seca1g04029 545 Gene3D - 318 484 IPR036397 GO:0003676
Seca1g04029 545 Gene3D - 41 108 - -
Seca1g04029 545 Gene3D Palm domain of DNA polymerase 503 545 IPR023211 -
Seca1g04029 545 SMART polmehr3 158 545 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04029 Seca-Chr1 123541582 123549638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04029 24 544 Core DNA Replication Machinery Family AT5G67100 48.926 2.56e-163 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04029 K02320 - gmx:100798779 615.92