Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04028 ATGAACGACCAGCTCTCCAACCCCACCTCCATCTTCGGCCTCCGCTTGTGGGTTGTCCTCGGCGTTTGTGTCGGTGCTGCCATCGTCCTCCTTCTCTTCCTCATCTCTATCTGGCTCGCTTTCAAGCGTTCCAAGACCAAACATTCCATCCCTGATGTCTCTAAGGAGATCCAAGAGATCAGAGTAGACCATGCCAACAACTCAAACAACCCTCCCCTTCAACCCGACCCACTTCCTGAACCCGACCCGGTTTCAGTCAACGAGCTCCAGCTACCGCTCGAAGATGACAATTCATTGGGTCTGGGCTACAATAGAATTCAGTTTGAGATTGGGAAGAACCATAGGATTTCGTACCCTGAACGTGCTTGCGTTAGGTCTTCTTCCCATGAAGGTAGTGGAGAGGCTCGACCCATGGATCAGGTGCCAACGGTGATTCCTCAAGTTTCTCACTTGGGTTGGGGACATTGGTATACTCTCAGGGAGCTTGAGGATGCAACCAATGGGTTCGCCCCAGAAAATGTTATTGGCGAAGGCGGCTATGGAATCGTTTATCATGGTATCTTGGAGGACAACACTAATATTGCAATCAAGAATTTGCTCAATAATAGGGGACAAGCTGAGAGAGAGTTTAAGGTTGAAGTGGAAGCTATAGGACGAGTTCGCCACAAAAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTGTATGAGTATGTTGACAATGGTAACTTGGAGCAATGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCAAAAGGGTTAACTTATCTTCACGAGGGGCTGGAACCAAAAGTTGTACACCGTGATATTAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGCATTCAAAGGTGTCAGATTTTGGCCTGGCCAAACTCCTTGGCCCTGAGAGCAGCTATATCACAACCCGTGTAATGGGTACATTTGGATATGTAGCTCCTGAATACGCAAGTACTGGTATGTTGAATGAACGAAGTGATGTGTATAGTTTTGGAATTCTTATAATGGAAGTAATTACAGGCAGGAATCCAGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTAGTTGATTGGCTCAAGAAGATGGTCAGTAACAGAAATCCAGAGGGAGTGTTGGATCCCAAGCTCCCTGAGAAACCAACTTCAAGGGCACTAAAGCGAGCCCTTCTTGTAGCCTTACGCTGCACAGACCCTAATGCACAAAAACGACCTAAAATGGGGCATGTAATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGTAACGATAATTTCTGCTAAGTTAATTCAACCCCACTATGGTGCTAGTTAA 1398 0.4614 MNDQLSNPTSIFGLRLWVVLGVCVGAAIVLLLFLISIWLAFKRSKTKHSIPDVSKEIQEIRVDHANNSNNPPLQPDPLPEPDPVSVNELQLPLEDDNSLGLGYNRIQFEIGKNHRISYPERACVRSSSHEGSGEARPMDQVPTVIPQVSHLGWGHWYTLRELEDATNGFAPENVIGEGGYGIVYHGILEDNTNIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWHSKVSDFGLAKLLGPESSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEVTIISAKLIQPHYGAS. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04028 465 FunFam Probable serine/threonine-protein kinase At1g01540 149 244 - -
Seca1g04028 465 CDD STKc_IRAK 175 441 - -
Seca1g04028 465 SMART serkin_6 169 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04028 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Seca1g04028 465 Gene3D Phosphorylase Kinase; domain 1 146 244 - -
Seca1g04028 465 ProSiteProfiles Protein kinase domain profile. 169 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04028 465 PANTHER OS01G0323000 PROTEIN 1 448 - -
Seca1g04028 465 FunFam Putative receptor-like serine/threonine-protein kinase 245 454 - -
Seca1g04028 465 Pfam Protein kinase domain 172 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04028 465 MobiDBLite consensus disorder prediction 65 86 - -
Seca1g04028 465 SUPERFAMILY Protein kinase-like (PK-like) 144 441 IPR011009 -
Seca1g04028 465 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Seca1g04028 465 Gene3D Transferase(Phosphotransferase) domain 1 245 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04028 Seca-Chr1 123538553 123541461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04028 146 443 Trihelix Transcription Factor Family AT1G70460 45.875 4.08e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca1g04028 Pkinase 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04028 - - gmx:100797726 776.933