Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04027 ATGAGCTCACTCTTGTTTGCTGTTGATGGTGAGGAGAGGTATAGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGAACCTTTGACTGCCCACCTGTTTTTAAATCTCTTTGTTCATTGGGGAGTGAAAAGCCAACCAGCTTAGGCACCGAGGAATCTGACTACAATTTCTGGAGTAAGCTGCACTGTCCTAAATGCCCGGAAAATGTTGTTGGTAGAATATCTCCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTTCATGTATTATAGAGGTTTACTAATGTGTGATGATGAAACGTGTAAACATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGATAGAGGAACTGATTGTCCAAATTTTCCTCGCATCTCTATAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCATATTTTTCCCATGTGTTTGTTGTATAGAAAAGATGGAGGTAAAATCTAG 501 0.4232 MSSLLFAVDGEERYRGCEPLVLSCPSCSGTFDCPPVFKSLCSLGSEKPTSLGTEESDYNFWSKLHCPKCPENVVGRISPAMIANQVKRQAEKFVFMYYRGLLMCDDETCKHTTRSISLRLVGDSDRGTDCPNFPRISIESTLKQTCTSSSHIFPMCLLYRKDGGKI. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04027 166 Pfam DNA Polymerase alpha zinc finger 9 120 IPR015088 GO:0003887|GO:0006260
Seca1g04027 166 Gene3D DNA Polymerase alpha, zinc finger 2 151 IPR038256 -
Seca1g04027 166 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 7 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04027 Seca-Chr1 123536352 123538171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04027 2 164 Core DNA Replication Machinery Family AT5G67100 52.907 1.33e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04027 K02320 - lja:Lj3g3v0930320.1 235.728