Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04026 ATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAGCTTGATGGGAATATATTTCCACTGGGATTCAGTAAGGAGGCTACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAAGTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGATAGAAGAAGCAAAGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATATTTGTGTTCTCGTGACCTATTAAAGGAGGTTAGTTATGCTTTAACTCACCTCGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGACGTTCCAAAAATGTTCCAAACAACAAAATCTCTAATGGAGCTTATTGAATATGGTGAAACGGATGCCTGGTTGTCTATGGAACTCATGTTTCATCTGAGTGCTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTAGAATATTTATTATTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTACAAATCATGCAAAAGAAACAAAATTGACCAAACGCAGAGTACATGGTGTTGATGATAGGAACTTTGATGAAGCAGAAATTGATGATGCAAACTACAATAATGATGCTTCTGAACGTGATCATAAGAAAAACAAAAAGGCTTCTTCCTATGCCAGGGGACTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCCGACGGATCTTTTCCTCGTCTACCATCTAGTAAAATAACTGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTGGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGACGACATCTGGTCTTAAAGTTCAGCAGTTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGCATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAACCACTAGCCGAGCTCATAACCCAACAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAGGCAATGGCTGGGAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTGTATAAGATGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTGAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTGGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAGCTCTCTCATGAAGGTAAATTGTGATGTGTTGCAGCATCTGTCAGACATTTGTTTATAA 1770 0.3944 MVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEATDRNIKAGSNVLCVESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKVGRLNRSTMPKLDRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYALTHLAKTQLNKFRKEVAPHDVPKMFQTTKSLMELIEYGETDAWLSMELMFHLSALPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTNHAKETKLTKRRVHGVDDRNFDEAEIDDANYNNDASERDHKKNKKASSYARGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKITGVLPELLKNLVERRRKVKSWMKTTSGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKMMLLLKKKKYAAVKVQLKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVNCDVLQHLSDICL. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04026 589 Gene3D - 1 281 IPR036397 GO:0003676
Seca1g04026 589 Gene3D - 511 586 IPR042087 -
Seca1g04026 589 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 2 581 - -
Seca1g04026 589 SUPERFAMILY Ribonuclease H-like 51 257 IPR012337 -
Seca1g04026 589 SUPERFAMILY DNA/RNA polymerases 253 575 IPR043502 -
Seca1g04026 589 Pfam DNA polymerase family B, exonuclease domain 38 162 IPR006133 -
Seca1g04026 589 Gene3D Helix hairpin bin 368 419 - -
Seca1g04026 589 FunFam DNA polymerase 1 282 - -
Seca1g04026 589 ProSitePatterns DNA polymerase family B signature. 458 466 IPR017964 GO:0000166|GO:0003676
Seca1g04026 589 FunFam DNA polymerase 368 417 - -
Seca1g04026 589 PRINTS DNA-directed DNA-polymerase family B signature 456 464 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g04026 589 PRINTS DNA-directed DNA-polymerase family B signature 327 340 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g04026 589 PRINTS DNA-directed DNA-polymerase family B signature 403 415 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g04026 589 CDD DNA_polB_alpha_exo 2 220 - -
Seca1g04026 589 SMART polmehr3 1 470 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca1g04026 589 NCBIfam DNA polymerase (pol2) 20 581 - -
Seca1g04026 589 Pfam DNA polymerase family B 228 582 IPR006134 GO:0000166|GO:0003677
Seca1g04026 589 Gene3D Palm domain of DNA polymerase 309 510 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04026 Seca-Chr1 123523450 123535138 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04026 2 576 Core DNA Replication Machinery Family AT5G67100 72.222 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04026 K02320 - jre:109009092 979.548