Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04024 ATGGATCAAGTGCCAACGGTGATTCCTCAAGTTTCTCACTTGGGTTGGGGACCTTGGTATACTCTTAGGGAGCTTGAGGATGCAACCAATGGGTTCGCCCCAGAAAATGTTATTGGCGAAGGCGGCTATGGAATCGTTTATCATGGTATCTTGGAGGACAACACTAATATTGCAATCAAGAATTTGCTCAATAATAGGGGACAAGCTGAGAGAGAGTTTAAGGTTGAAGTGGAAGTTATAGGACGAGTTTGCCACAAAAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGTATGATTGTGTATGAGTATGTTGACAATGGTAACTTGGAGCAATGGCGGCATGGGGATGTTGGGCCTTGCATTCCTATAACTTGGGAAATTCGAATAAACATTATTCTGGTAACGACAAAAGGGTTAACTTATCTTCACGAGGGGCTGGAACCAAAAGTTGTACACCGTGATATTAAATCAAGCAACATTTTGCTTAGTAAGCTGTGGCATTCAAAGGTGTCAGATTTTGGCCTAGCCAAACCCCTTGGCCCTGAGAGCAGCTATATCACAACCCGTGTAACGGGTACATTTGGATATGTAGCTCCTAAATACGCAAGTACTGGTATGTTGAATGAACGAAGTGATGTGTATAGTTTTGGAATTCTTATAATGGAAGTAATTACAAGCAAGAATCCAGTTGATTATAGTCGACCTCCAGAAGAGGTGAATTTAGTTGATTGGCTCAAGAAGATGGGCAGTAACAGAAATCCAGAGGGAGTGTTGGATCCCAAGCTCCCTAGGAAACCAACTTCAAGGGCACTAAAGCGAGCCCTTCTTGTAGCCTTACACTGCACAGACCCTAATTCACAAAACCAACCTAAAATGGGGCATGTAATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGTCTAGCCAGAAAGGATACAGGACATTCATCTAACGCAAGAGTAGTAGGGGATGAATTGAAAGAAGAAGCGACTGTATCAGCTCATGATCTTAAGATTGAAAACGGGGTGGGTGCCAATGAGACAAGATCAAACCATCAAATAGAAAAGCAATAA 1095 0.4247 MDQVPTVIPQVSHLGWGPWYTLRELEDATNGFAPENVIGEGGYGIVYHGILEDNTNIAIKNLLNNRGQAEREFKVEVEVIGRVCHKNLVRLLGYCAEGAHSMIVYEYVDNGNLEQWRHGDVGPCIPITWEIRINIILVTTKGLTYLHEGLEPKVVHRDIKSSNILLSKLWHSKVSDFGLAKPLGPESSYITTRVTGTFGYVAPKYASTGMLNERSDVYSFGILIMEVITSKNPVDYSRPPEEVNLVDWLKKMGSNRNPEGVLDPKLPRKPTSRALKRALLVALHCTDPNSQNQPKMGHVIHMLEAEDSPYKEDRLARKDTGHSSNARVVGDELKEEATVSAHDLKIENGVGANETRSNHQIEKQ. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04024 364 MobiDBLite consensus disorder prediction 337 364 - -
Seca1g04024 364 PANTHER OS01G0323000 PROTEIN 9 320 - -
Seca1g04024 364 Pfam Protein kinase domain 35 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04024 364 FunFam Probable serine/threonine-protein kinase At1g01540 12 107 - -
Seca1g04024 364 Gene3D Transferase(Phosphotransferase) domain 1 108 326 - -
Seca1g04024 364 Gene3D Phosphorylase Kinase; domain 1 14 107 - -
Seca1g04024 364 SUPERFAMILY Protein kinase-like (PK-like) 7 304 IPR011009 -
Seca1g04024 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Seca1g04024 364 ProSitePatterns Protein kinases ATP-binding region signature. 38 60 IPR017441 GO:0005524
Seca1g04024 364 FunFam Putative receptor-like serine/threonine-protein kinase 108 318 - -
Seca1g04024 364 ProSiteProfiles Protein kinase domain profile. 32 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04024 364 CDD STKc_IRAK 38 304 - -
Seca1g04024 364 SMART serkin_6 32 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04024 Seca-Chr1 123485401 123500981 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04024 19 304 Receptor kinase-like Gene Family AT4G02010 42.268 1.30e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca1g04024 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04024 - - gmx:100797440 633.254