Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04017 ATGGATTGGGTACGAGGAGACTCAATTGGAAGAGGAATCTTCGCTACTATCAATTTGGCTAAACCAACCACAAGCAATTCCACTTGGTTTTCTTCTCCGACCGTTGTTAAATCCTCTGAGGCTTCAACCTCGTTTTCGCTCAAGAACGAGAAACATGTCCTTGATTGCTTAGGTTCATTTCGGAGAATCATTCGGTGTTTCGGCGATGACTACACCTTCGAGAATGGTGAAGAGTATTACAATTTGTTCCTTGAATACGCCGCTGGCGGGAGTCTCTCTGATCAGCTCAAGTTCCACGGTGGCCGGATTCCGGAGCAACGAGTTTGGAGTTACACGAGGTCTGTTATCGAGGGGCTTATGCATATACACAAGAACAGGTTTGTTCACTGTGATGTGAAGCTTTAG 405 0.4593 MDWVRGDSIGRGIFATINLAKPTTSNSTWFSSPTVVKSSEASTSFSLKNEKHVLDCLGSFRRIIRCFGDDYTFENGEEYYNLFLEYAAGGSLSDQLKFHGGRIPEQRVWSYTRSVIEGLMHIHKNRFVHCDVKL. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04017 134 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Seca1g04017 134 Pfam Protein kinase domain 5 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04017 134 SUPERFAMILY Protein kinase-like (PK-like) 3 133 IPR011009 -
Seca1g04017 134 ProSiteProfiles Protein kinase domain profile. 3 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04017 134 Gene3D Transferase(Phosphotransferase) domain 1 1 134 - -
Seca1g04017 134 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04017 Seca-Chr1 123093204 123093608 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04017 1 134 MAP Kinase Kinase Kinase AT4G36950 52.985 9.19e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca1g04017 Pkinase 1.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04017 - - lja:Lj0g3v0312569.1 201.06