Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04009 ATGATTGTAGGTGGTTCTTCCCCACTAACTTCGAAGAGGAGAAGGGTCACCAACATTTATTCCACGAACATGGATATTGAAGCTGCTAAGGCCAAGCATGCAGCTATGAAAGAAAAATTTGGACGAGAGATCCATGTTTTTGAAACACCAGCTCTTTCTCCATCTTCAAATGCTGCATCATCTAATGAAGGAGAGGAGACTGATGACTTCTATGAGTTTACTGCGGAAGATTATTACCGACTTATGGCTACTAAAAAGGAAGATAAATTCTTGAAGACTCGAAAAATCCGAGAAGCAGAAGAGGCGTCTCATAGGTCAAGAATAACCAAAGCAGTAATTAGAGTTCGCTTCCCTGATAATCACACATTGGAGGCTACCTTCCACCCATCAGAAACAGTCCAGAGTTTAATTGATCTCCTCACTAAAGTGATTGCACAGCCAGAGCAGCCATTTCATATATGTAGGCATATTAATATCCTATATATGATCATTAGCTAG 498 0.4036 MIVGGSSPLTSKRRRVTNIYSTNMDIEAAKAKHAAMKEKFGREIHVFETPALSPSSNAASSNEGEETDDFYEFTAEDYYRLMATKKEDKFLKTRKIREAEEASHRSRITKAVIRVRFPDNHTLEATFHPSETVQSLIDLLTKVIAQPEQPFHICRHINILYMIIS. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04009 165 Gene3D - 100 158 - -
Seca1g04009 165 SUPERFAMILY Ubiquitin-like 84 154 IPR029071 -
Seca1g04009 165 ProSiteProfiles UBX domain profile. 106 153 IPR001012 GO:0005515
Seca1g04009 165 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 1 154 IPR044232 GO:0032984|GO:0051117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04009 Seca-Chr1 122801971 122807419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04009 28 139 C2H2 Transcription Factor Family AT2G01650 30.172 1.40e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04009 K15627 - gmx:100792947 256.144