Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03985 ATGACTCAACATTACATTCTCTTGGATCTCAAAATGGGAAGGAGTTCTCCAATGTCACTCATTATGTGCTTCTTTGTTCTGCACTTGTTAGCATGGTCAAGGGTGCTACTAGCTAATGAAGAAAGAGGCCACTGTTTAGTCCCACCAAGGCCCATTATGAGCATAGGTTCTGTGCTTGATTTGGGTTCACTAATGGGTAAACATCAGAAGATAGCAATGGAAATTGCAGTTCAAGAGTTCAACCGCTTGAGCTGTTCCAAGCTGAATTTAAAGATAAAAGATTCCGGTGGGAACTCGGCTCAAGCAATTGCTAGTGCTATGGATCTGGCGCAGAGCAACCAAGTGCTAGCCATCATAGGAACAATCACAAAAAGCGAAGCAACTCTGGCATGTGAATTAAGTGAGACCATAAAGAAGGTTCCTATCTTGTCTCTAACTTCACCTGCAGCCACAACATTATCATCTCCTCAATTGCCACACTTCATCCAAGTTGGAGAAGATGTCAATCTTCACATGAAATGCATTGCAGCTATTGTAGGAGAATTCAGGTGGCAAAAGGTGACACCAATCTATGAACTCAGTAACGGGTTTTCCTCTGATCCAGGGATATTGTTTAGCCTCTCCTATTCTCTTCGACTTGTTGGCTCTGAGATTGAAAACCATTTAGCTTTGCCTTCCTTATCCACTCTATCAGACCCAAAATCAATTATTGAAAATGAGCTTAGTAAGCTTAAGAGGAAAAGTAACAGGGTTTTCTTGATTGTACAATCTTCTTTAGAGATGGCTAACTTGGTTTTTGAGAAAGCAAAGCAAATGGGTTTGATGGGAAAAGGTTCTGTGTGGGTTATCCCAGATGGGGTTGCTAGCCTTCTTGATTCAGTTAACTCATCAGTTATCTTTAACATGCAAGGTGTTTTGGGGTTTAAAACACACTTTATGGAAACGAGTGACACATTTAGAAAGTTCAAGTTCAAGTTTAGGAGAAGGTTTACATTAGAATACCCTGAAGAAGAGAACATTAACCCAAGCATCTTTGCACTCCAAGCATATGATGCAACTTGGACTATTGCTCAGGCTGCAAATAAATCACAAGGAAAGTTCAGCTTAGAAGAATTCACAGAAAAGATTCTGTCTAGTAAATTTGACAGACTAAGTGGAAAGACTAGCTCCAAGAATGATAAATTACTGCAATCACCAACCTTCAATATAATTAATGTGATAGGAAAGAGTTACAGAGAATTGACATTTTGGTCTCCATCACATGGTTTTTCCAAGAACATTGTTAGACATAAAGAAATGGAGATAAACACAGATAATGGTTCTGCTGGAGTTTTCAGAACAGTTTATTGGCCTGGAGACTCACAATCGGTTCCTAAAGGATGGACACACAGTAATGAGGAAAGGAAATTGAAAATAGGAGTGCCTGCCAAAGGTGCCTTTACTCAGTTTGTGAATGTGACATATGATCAGAGTAGGAATGAAACTTCCTTCTCTGGTTTCTCAATCAGTGTCTTCAAAGCAGCTGTTAAACGTTTGCCTTATAACTTGCCATACTTGTTTGTTCCTTTCAATGGTTCTTATGATGAAATGGTTGATCATGTTTACAATAAGACCTTGGATGCTGCTGTCGGAGACACATCAATAATGGCATATAGATATCATTTAGTTGATTTCTCACAACCATATGTTGAATCTGGCCTTGACATGGTGGTTACTGAGCAATCAACTAAATTAAAAGGAACATGGATATTTTTAGAAGCTTTTACAAAAGAGATGTGGTTGATGATGGTAGCTATGCACATTTTTGTGGGATTTGTTATTTGGTTGATTGAACGGGAAGCTAATGCAGAACTAAGGGGATTGGGATCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATAAGAAGACCCTTGGCTCGAATTGTGCTAGCACCATGGTTATTTGGTATCTTCATTGTAACAAGTAGTTTCACAGCAAGTTTGACATCCATGATGACTATTTCACAAGTAGAGCCATCTGTGTTGGATATTCAGACCCTTCATGAAAGAAATTCCCCAGTTGGTTGTGATGGAAACTCATTTATTATGAAGTATTTGACTGAAGTGCTCAAATTCAAGCATGAGAACATCAAGAAAATAAATTCCATAAGTGATTATCCTGCTGCATTTAAGAACAAGGATATAGAAGCTGCTTTCTTTGTTGTGCCTCATTCAAAAGTCTTTCTAGCAAAGTACTCATGCAAGGGCTTCATCAAAGCAGGGAACACTTTCAGGCTTGGTGGCTTTGGTTTTGTATTTCCAAAAGGTTCCACTCTAGCTGCTGACATATCTGAGGCATTGCTGAATGTGATAGAGAGTGGAGAAACAGAACAACTAGAAAAAGATATGCTGAATATGATAGAGAGTGGAGGGAATGCAAGTTGTTCTCCTTTAGAGAGCAAGGAAAGAGACAAGTCATCCATAGGATTTCAACCTTTCCTTGGACTATTTGGCATCTGTTCTAGTGTTGCTACTGTGGCATTGTTATATAATATGATTTGTTTGTCCATGATGAATGTAGAGACCTTGACAAGCCACATACAATTAACATTAACACAAATAAGGAGAATTCAGAGATGGACAACCGCATATTTTGCTCGGTGCTGTTCAAAACTCCAATCAAGGAGCATGAGAAGGGTAGGCACTGCCACAGAAACGAGAAATGCACAGGAGACAGTCACTAACAGCCAGCAGAGCCCAGTGGTTGTTGAGCTTGTTGATATAGTACTGGCTGCTCATGCTTCATGA 2805 0.3939 MTQHYILLDLKMGRSSPMSLIMCFFVLHLLAWSRVLLANEERGHCLVPPRPIMSIGSVLDLGSLMGKHQKIAMEIAVQEFNRLSCSKLNLKIKDSGGNSAQAIASAMDLAQSNQVLAIIGTITKSEATLACELSETIKKVPILSLTSPAATTLSSPQLPHFIQVGEDVNLHMKCIAAIVGEFRWQKVTPIYELSNGFSSDPGILFSLSYSLRLVGSEIENHLALPSLSTLSDPKSIIENELSKLKRKSNRVFLIVQSSLEMANLVFEKAKQMGLMGKGSVWVIPDGVASLLDSVNSSVIFNMQGVLGFKTHFMETSDTFRKFKFKFRRRFTLEYPEEENINPSIFALQAYDATWTIAQAANKSQGKFSLEEFTEKILSSKFDRLSGKTSSKNDKLLQSPTFNIINVIGKSYRELTFWSPSHGFSKNIVRHKEMEINTDNGSAGVFRTVYWPGDSQSVPKGWTHSNEERKLKIGVPAKGAFTQFVNVTYDQSRNETSFSGFSISVFKAAVKRLPYNLPYLFVPFNGSYDEMVDHVYNKTLDAAVGDTSIMAYRYHLVDFSQPYVESGLDMVVTEQSTKLKGTWIFLEAFTKEMWLMMVAMHIFVGFVIWLIEREANAELRGLGSMLWFLVTVIFYAHREPIRRPLARIVLAPWLFGIFIVTSSFTASLTSMMTISQVEPSVLDIQTLHERNSPVGCDGNSFIMKYLTEVLKFKHENIKKINSISDYPAAFKNKDIEAAFFVVPHSKVFLAKYSCKGFIKAGNTFRLGGFGFVFPKGSTLAADISEALLNVIESGETEQLEKDMLNMIESGGNASCSPLESKERDKSSIGFQPFLGLFGICSSVATVALLYNMICLSMMNVETLTSHIQLTLTQIRRIQRWTTAYFARCCSKLQSRSMRRVGTATETRNAQETVTNSQQSPVVVELVDIVLAAHAS. 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03985 934 Pfam Receptor family ligand binding region 70 407 IPR001828 -
Seca1g03985 934 SUPERFAMILY Periplasmic binding protein-like I 53 461 IPR028082 -
Seca1g03985 934 Gene3D - 50 169 - -
Seca1g03985 934 Pfam Ligand-gated ion channel 801 839 IPR001320 GO:0015276|GO:0016020
Seca1g03985 934 PIRSF IGluLR_plant 17 923 IPR017103 -
Seca1g03985 934 FunFam Glutamate receptor 465 579 - -
Seca1g03985 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 54 854 IPR015683 -
Seca1g03985 934 CDD GluR_Plant 468 803 - -
Seca1g03985 934 Gene3D - 170 342 - -
Seca1g03985 934 Pfam Bacterial extracellular solute-binding proteins, family 3 494 800 IPR001638 -
Seca1g03985 934 SMART GluR_14 469 805 IPR001320 GO:0015276|GO:0016020
Seca1g03985 934 FunFam Glutamate receptor 171 340 - -
Seca1g03985 934 Gene3D - 583 723 - -
Seca1g03985 934 Gene3D - 463 582 - -
Seca1g03985 934 FunFam Glutamate receptor 581 714 - -
Seca1g03985 934 CDD PBP1_GABAb_receptor_plant 54 427 IPR044440 -
Seca1g03985 934 SUPERFAMILY Periplasmic binding protein-like II 446 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03985 Seca-Chr1 121011045 121015237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03985 53 853 Ion Channels AT5G11180 31.095 4.47e-120 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03985 - - gmx:100778941 1293.87