Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03980 ATGTCAACTATTGTGTGCTTCTTTGTTCTGCAATTATTGGCATGGTCAAAGGTTAGTGCTAATGAAAGAAGAGGCCATTGCTTAATCACCCCACGGCCCATTATGAACATAGGTGCTGTGCTTGATTTGGGTTCAAAAATGGGTAAGCAGCAGAAGGTAGCTATGGAAATTGCAGTCCAAGAGTTCAATCACTTGAGTTGTTCTAAGCTGGTTTTGAAGATAAAAAATTCCAAAGGGATATCAACTCAAGCAGTTGCTGGTGCTATAGATCTTGCACAGAACGAGGAGGTGATAGCCATCATAGGAACAATAACACACAACGAAGCAACTCTGGCAAGTGAAATTAATAAGAAGATAAAGAACATTCCTATCTTGTCTTTAACTTCACCTGCAGCCCCTAGAAGAGAGCTATTATCTCCTCTATTGCCATACTTCATCCAAATGGGCAATGATATCAGCCTTCACATACAATGCATTGCAGCCATTGTAGGAGAGTTCAAATGGCAAAAGGTGACACCAATCTATGAACTTAATAATGGGATTTCCTCTGATCTAGCAATACTAATTGGTCTCTCCTATACCCTTCAACTTGTTAGTTCTGAGATTGATAGCTATTTAGCTTTGCCTCCCTTATCCACTCTGTCAGACCCAAAATCTATGATTGAACATAAGCTTAATAAGCTGAAAAGGAAGAGTAACAGGGTTTTCTTGATTGTGCAATCTTCTTTAGAGATGGCTAACTTGGTTTTTGAGAAAGCAAAGCAAATGGGTATGATGGAAAAAGGTTATGTGTGGGTTATCCCAGAGGGGGTTGCTGGCCTTCTTGATTCAGTTAACTCATCAGTTATCTTTAACATGCAAGGTGCTATTGGATTTAAAACACACCACATAGAAATGAGTGAGACATTTAGACAGTTCAAATTCAAATACAGAAGAAGGTTTGCATTAGAGTACACTGAAGAAGAAAGCATTGACCCAAGTATCTTTGCAGTTCTATCATATGATGCAACTTGGACTATTGCTCAGGCTGCAAAGAAATTACAAGGAAGGTTCAGCCAGGAAGAATTTTCAGAAAAGATTCTGTCCAGAAAAGGAAAATTACAGGAATCACCAACTTTCAGTATAATAAATGTGATTGGGAAAAGCTACATAGAGTTGGCATTTTGGTCTCCAGTAATTGGTTTCTCCAAGAACCTTGTGAGACATCAGCTAATGGAGGTGACTGTAAATAATGATTCAACTGGAGTTATGGGTGTAGTTCATTGGCCTGGAGGCTTACTATCTGTTCCTAATGGATGGACTAATAGTAGTAATGAGGCAAGGTTATTGAAAATAGGAGTGCCTGCACAAGGTGCCTTTAACCAATTTGTCAATGTAACCTATGATCAGAGCAGGAATTCAACTTCCATCACTGGTTTTTCAATTGATGTCTTCAAAGCAGCTGTTAAACGTCTGCCTTATCACTTACCATATGTATTTGTTCCTTTCCATGGCTCTTATGATGAAATGGTTGAGCAAGTCCACAAAAAGGAATTTGATGCTGCTGTTGGAGATACAGAAATAATGGCATATAGATATCGCCTTGTAGAATTTACACAACCATATGTTGAATCTGGCCTTGATATGGTGGTTACTGAGGATAAATCAAAACAAACGTGGATGGTTTGGAAAGCCTTTAGAAAAGAGATGTGGTTGATGATGGTAGCAATGCATATTTTTGTTGGATTTGTTATTTGGTTTATTGAACGGGAAGTCAATGCAGAACTAAAAGGGTTAGGGGCCATGCTTTGGTTTTTAGTTACAGTAATTTTCTATGCACACACAGGAGAACCAATAAGAAGCCCTGTGGCTCGAGCTGTGCTGGGGCCATGGTTATTTGTGATCTTCATTATAACAACCAGTTTTGGATCAAGTTTAACAACCATGATGACCATCTCACAACTAGAACCATCTGTGTTAGATATCCAGACCCTTCAGAGAACAAATGCCATGGTTGGCTGTAATGGAAATTCTTTTATTGTGAGGTATTTGATTGAAGTACTCAAGTTCAAGCCTGAGAACATTAGGAGAATCAATTCCATAAGTGATTACCCTGCAGCCTTTGAGAATAAGGATATAAAAGCTGCTTTCTTTGTTGCACCTCATGCTAAAGTCTTCCTTGCAAAGTACTCATGTAAGGGCTTCATCAAAGCAGGGAACACCTTCAAGCTTGGTGGCTTTGGTTTTGTATTTCCTAAAAGTAACACTCTGGCTGCTGACATATCAGAGGCATTACTTACAATGATAGAGAGTGGAGAAACAGAACAACTAGAGAAAGTTATGCTATCCACTGCTAGTTGCTCTCCTTCAGACAGTGATGAAAATGTTGGGTTAGGTTTTCAGCCTTTCCTTGGCCTATTTTACATCTGTGGTACTATTGCTGGACTGGGATTGTTATATGCCATGATGTGTTTAGTTGTGAAGAATGTAGAGACCTTGATGACCCACATACAAGTTCCATTGGCACAATTAAGGAGAATATGGAGATTGACAAACACATTTTTGGCTCAGAGCTATTCAAAACTCCAACTCAGGAGAAGAATAAGTCCAGCCATTGAAACAAGAAATGCAGAGGAGACAGAGAGTAATAGGGAGCAAAATCCAGCTATCGTTGAACTAAATGTAATAATGGTTCCTCATGCTTCCTGA 2688 0.3917 MSTIVCFFVLQLLAWSKVSANERRGHCLITPRPIMNIGAVLDLGSKMGKQQKVAMEIAVQEFNHLSCSKLVLKIKNSKGISTQAVAGAIDLAQNEEVIAIIGTITHNEATLASEINKKIKNIPILSLTSPAAPRRELLSPLLPYFIQMGNDISLHIQCIAAIVGEFKWQKVTPIYELNNGISSDLAILIGLSYTLQLVSSEIDSYLALPPLSTLSDPKSMIEHKLNKLKRKSNRVFLIVQSSLEMANLVFEKAKQMGMMEKGYVWVIPEGVAGLLDSVNSSVIFNMQGAIGFKTHHIEMSETFRQFKFKYRRRFALEYTEEESIDPSIFAVLSYDATWTIAQAAKKLQGRFSQEEFSEKILSRKGKLQESPTFSIINVIGKSYIELAFWSPVIGFSKNLVRHQLMEVTVNNDSTGVMGVVHWPGGLLSVPNGWTNSSNEARLLKIGVPAQGAFNQFVNVTYDQSRNSTSITGFSIDVFKAAVKRLPYHLPYVFVPFHGSYDEMVEQVHKKEFDAAVGDTEIMAYRYRLVEFTQPYVESGLDMVVTEDKSKQTWMVWKAFRKEMWLMMVAMHIFVGFVIWFIEREVNAELKGLGAMLWFLVTVIFYAHTGEPIRSPVARAVLGPWLFVIFIITTSFGSSLTTMMTISQLEPSVLDIQTLQRTNAMVGCNGNSFIVRYLIEVLKFKPENIRRINSISDYPAAFENKDIKAAFFVAPHAKVFLAKYSCKGFIKAGNTFKLGGFGFVFPKSNTLAADISEALLTMIESGETEQLEKVMLSTASCSPSDSDENVGLGFQPFLGLFYICGTIAGLGLLYAMMCLVVKNVETLMTHIQVPLAQLRRIWRLTNTFLAQSYSKLQLRRRISPAIETRNAEETESNREQNPAIVELNVIMVPHAS. 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03980 895 PIRSF IGluLR_plant 1 369 IPR017103 -
Seca1g03980 895 PIRSF IGluLR_plant 354 887 IPR017103 -
Seca1g03980 895 SUPERFAMILY Periplasmic binding protein-like II 418 772 - -
Seca1g03980 895 FunFam Glutamate receptor 438 552 - -
Seca1g03980 895 CDD PBP1_GABAb_receptor_plant 36 399 IPR044440 -
Seca1g03980 895 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 857 IPR015683 -
Seca1g03980 895 CDD GluR_Plant 443 775 - -
Seca1g03980 895 SUPERFAMILY Periplasmic binding protein-like I 33 433 IPR028082 -
Seca1g03980 895 Pfam Bacterial extracellular solute-binding proteins, family 3 467 772 IPR001638 -
Seca1g03980 895 Gene3D - 153 323 - -
Seca1g03980 895 Gene3D - 436 559 - -
Seca1g03980 895 FunFam Glutamate receptor 155 324 - -
Seca1g03980 895 FunFam Glutamate receptor 552 686 - -
Seca1g03980 895 Gene3D - 739 771 - -
Seca1g03980 895 Pfam Receptor family ligand binding region 52 348 IPR001828 -
Seca1g03980 895 SMART GluR_14 444 777 IPR001320 GO:0015276|GO:0016020
Seca1g03980 895 Gene3D - 30 152 - -
Seca1g03980 895 Gene3D - 674 738 - -
Seca1g03980 895 Pfam Ligand-gated ion channel 773 804 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03980 Seca-Chr1 120945511 120950655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03980 35 817 Ion Channels AT5G11180 29.196 8.22e-107 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03980 - - gmx:100778941 1140.18