Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03979 ATGGAGGACAAGGCCAGAATCTGCACGGTGGATCCAAAGAGCGGTTTCAACTCCGCTTCCAAAATCTTCCACAGCCTAAGGCGCCCACTAAACCTTCCTCCATCTAACGCCACCATCTCCGCCGCGGCCTACACCCTCTCCCTCCGCCACAACTCGCCCTGGTCAGACTCAGTTATTGCCCTCATCGACTCAGCCACGTGTCACCAGCTCTCCTACTCCGACTTCATCCACTGTTCACAAACCTTAGCCACCAACCTCACCACTCTCCACGGACTCACCAAAGGCCACACCGCATTCATTCTCTCTCCAAACCTCATCCAAGTTCCGATCCTCTACCTCGCGCTACTCTCCATTGGCGTGGTCCTCTCCCCCGCAAACCCAACCTCCACGCGCTCCGAGATTTCGAACCTCCTCAAACTCTCCCAACCTGTTATCGCTTTTACGACGTCGTTTTCCGCGAACAAACTCCAAAGCCTCCCTCTTGGAACGATTCTCCTCGACTCACCCGAGTTCGACTCGCTCTTGAAGACCGCGAGTTCCATACCGCCGCCGAACGCGGAGGTGAGTCAATCCGACGTGGCGGCGGTTTTGTACTCGTCGGGGACCACGGGGAAGTCGAAAGGAGTGATGCTCACGCACCGTAACTTGACGGCGATGGTGGCGATAAGCGACACCGTTCGCGTGCAGACGGAGGGACCTGCGGTGTACCTGCATACGGCGCCGTATTTTCACGTTTATGGTTTTACGAGTATTTTGAGGTCGGTGGCTATGATGGACACCGTGGTGGTGATGGAGAGGTTTGGTTTGGGGAAGATGCTGGGGGCGGTGGAGAAGTTCCGGTTGACTCACGTGGTGACGGCGCCGCCGGTAGTGGTGGCGATGAGCAGAGAAGGAGTGACGGAGGGGTATGATTTGACGTCATTGAAGGTCGTCATTTGTGGTGGTGCTCCGCTTGGGAATCACAACGCCACGGTTTTTAAATCCAAGTTACCTGGAGTGCTGCTCAGCCAGGGATATGGGTTAACTGAATCAACAGCCGGAGCTATCCGAACAACAGGTCCGGAGGAGGCTAACCGGGCAGGAACAACAGGTAGGCTGGTATCTGGGATGGAAGCAAAAATAGTGAACCCCAACACAGGAGAGGCCATGTTTCCTGGTGAACAAGGGGAACTCTGGATTAGAGGACCTACAATTATGAAAGGGTATGTTGGTGACCCAGAGGCAACTTCTGTTACATTGCAGGACGGGTGGCTGAGGACTGGGGATCTTTGCTATTTCGACAATGAGGGTTTCATGTATGTTGTGGACAGGTTGAAAGAATTGATCAAATACAAGGGCTACCAGGTAAACTTATCTGATTCTATTGCCCTTCCATCCAACTCATGCATGATATATTGTCAACTGCTAGAGCTAGAACAATTGCTCCAGTCTCACCCAGAGATAAACGATGCTGCTGTTATTCCATACCCTGATGAAGATGCTGGCCAGGTGCCCATGGCCTTTGTGGTAAGACAGCCTCAAAGTTGCCTGAGCAAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAAATAAGGAGTGTAGCATTTATCGATTCCATACCAAAGAATGCAGCAGGGAAAATACTGAGGAAGGACTTAAATAAATTTGTTCTCGGACGATCATGCTCTAGGTTATAA 1692 0.5177 MEDKARICTVDPKSGFNSASKIFHSLRRPLNLPPSNATISAAAYTLSLRHNSPWSDSVIALIDSATCHQLSYSDFIHCSQTLATNLTTLHGLTKGHTAFILSPNLIQVPILYLALLSIGVVLSPANPTSTRSEISNLLKLSQPVIAFTTSFSANKLQSLPLGTILLDSPEFDSLLKTASSIPPPNAEVSQSDVAAVLYSSGTTGKSKGVMLTHRNLTAMVAISDTVRVQTEGPAVYLHTAPYFHVYGFTSILRSVAMMDTVVVMERFGLGKMLGAVEKFRLTHVVTAPPVVVAMSREGVTEGYDLTSLKVVICGGAPLGNHNATVFKSKLPGVLLSQGYGLTESTAGAIRTTGPEEANRAGTTGRLVSGMEAKIVNPNTGEAMFPGEQGELWIRGPTIMKGYVGDPEATSVTLQDGWLRTGDLCYFDNEGFMYVVDRLKELIKYKGYQVNLSDSIALPSNSCMIYCQLLELEQLLQSHPEINDAAVIPYPDEDAGQVPMAFVVRQPQSCLSKAEIIDFVAKQVAPYKKIRSVAFIDSIPKNAAGKILRKDLNKFVLGRSCSRL. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03979 563 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Seca1g03979 563 Gene3D - 31 439 IPR042099 -
Seca1g03979 563 FunFam 4-coumarate--CoA ligase 2 461 558 - -
Seca1g03979 563 Pfam AMP-binding enzyme 59 444 IPR000873 -
Seca1g03979 563 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 553 - -
Seca1g03979 563 SUPERFAMILY Acetyl-CoA synthetase-like 59 557 - -
Seca1g03979 563 Gene3D - 440 556 IPR045851 -
Seca1g03979 563 Pfam AMP-binding enzyme C-terminal domain 470 545 IPR025110 -
Seca1g03979 563 CDD 4CL 33 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03979 Seca-Chr1 120933010 120939577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03979 10 563 Monolignol Biosynthesis Gene Families AT5G63380 49.562 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03979 K01904 - gmx:100801143 690.263