Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03950 ATGCAGGGCCTCTCTTCCTTTTTCACTGTGTCGCTATTCTCATTCTCTCTACGCATCTGTTTAGAGAACCTTTCACCCAGCAACCCCAGCACAGCCACCACGCTCCCATTCTCTACAGTTTCAGATCCCCCATCGTCTCTTTCAGTCCCACCTGCAACTACCAAACGCGTTAGTGCAGTAAACGCTCCAGATGAGCAATGCGCGTATCAAACCATTGTCCACATTGGTGGCCATGTTTTCAAAGGAAATCTGTATGATCAAGGTCCAGAAAGTTCTTATACCAATACAGCTGTTGAGGGTTCCTCCAGCAGAGGTGGAGGTGAAGCTCATCAGCAACTTGGTTTCATAACCGCTGCAACTGCAACCACAGCCACAGGTAGTGGCAATCCATTTGACCCTTCACTTTACCCCTCTTCTCTGAATGCTTTTATGGCTGAGACTCCTGGACGAAACTATTTGATGTTGTTATTGCTAAGGGAGTACATGTTTTGCTCTCAGAATGGACCCATCAGGTAG 516 0.4748 MQGLSSFFTVSLFSFSLRICLENLSPSNPSTATTLPFSTVSDPPSSLSVPPATTKRVSAVNAPDEQCAYQTIVHIGGHVFKGNLYDQGPESSYTNTAVEGSSSRGGGEAHQQLGFITAATATTATGSGNPFDPSLYPSSLNAFMAETPGRNYLMLLLLREYMFCSQNGPIR. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03950 171 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 55 141 IPR007818 GO:0003700|GO:0006355
Seca1g03950 171 Pfam Domain of unknown function (DUF702) 54 90 - -
Seca1g03950 171 NCBIfam LRP1 C-terminal domain 56 89 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03950 Seca-Chr1 120191408 120195003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03950 56 145 C2H2 Transcription Factor Family AT1G19790 43.137 1.26e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca1g03950 DUF702 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03950 - - gmx:100818588 123.25