Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03949 ATGCTTGGACAACTGAAATACTTAGAGACATTGAATCTCTCACATAATAATATTTCTGGTGCTATTCCCTCGAGCTTTGTGGAGATGTTAAGCTTGACAACTGTTGATATATCAGACAACCAACTAGAGGGTTCAATTCTAAGCATTCCAACCTTCCAAAAAGCTCCAATTGAAGCATTGAGAAATAACAAAGGCTTGTGTGGTAATGTCACTGGCCTTAAGCCTTGCTCAACATCAAGTGGCATATCTCATGATCATAAGCTTCGCAAAATCATATTGATTGTTTTACCCATTGCTTTTGGAACTCTAATAGTAGCACTATTTGTTTTTGGGCATCTCATTGGGGCTGGAGGACATGGGTGTGTTTACAAGGCAAATTTGTCTACAGGTCAAGTTGTAGCTATGAAGAAACTTCATTCAATACCAAATGGACAAATGTCTGATCTTAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAGATCAAACATCGTAACATTGTAAAGCTTTATGGGTTTTGTTCACGTTCACAACACTCATTTTTGGTTTACGAGTTCTTGGAGAAGGGCACCTTTGGATATGTTGCTCCAGAACTTGCATATACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCAATGGAAATACTTTTTGGAAAGCACCCTGGAGATTTTATATCTTCTTCGTTGCAATCATCTTCATGGAGTATAGAGGGATCAACACTTGATACTTTGCCATTCATAAATAAGTTGGACAACCGTCTCCCTCATCCAAAAAATCCTATTGTTAAGGAGGTGGTGTCAATGGCAAGGATTGCAATTGCTTGCTTAAATGAAAGCCCACGTTCTCGCCCTACCATGGAGCAGGTGTGCAAGAAGCTTGCAATGCCAAAGTCATATTCAATGGATTATGCAATCACACATATATAG 945 0.3862 MLGQLKYLETLNLSHNNISGAIPSSFVEMLSLTTVDISDNQLEGSILSIPTFQKAPIEALRNNKGLCGNVTGLKPCSTSSGISHDHKLRKIILIVLPIAFGTLIVALFVFGHLIGAGGHGCVYKANLSTGQVVAMKKLHSIPNGQMSDLKAFTSEIQALTEIKHRNIVKLYGFCSRSQHSFLVYEFLEKGTFGYVAPELAYTMEVNEKCDVYSFGVLAMEILFGKHPGDFISSSLQSSSWSIEGSTLDTLPFINKLDNRLPHPKNPIVKEVVSMARIAIACLNESPRSRPTMEQVCKKLAMPKSYSMDYAITHI. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03949 314 FunFam Leucine-rich repeat receptor protein kinase MSP1 98 186 - -
Seca1g03949 314 SUPERFAMILY Protein kinase-like (PK-like) 91 299 IPR011009 -
Seca1g03949 314 Pfam Leucine Rich repeat 31 47 IPR001611 GO:0005515
Seca1g03949 314 Pfam Leucine Rich repeat 6 20 IPR001611 GO:0005515
Seca1g03949 314 Gene3D Transferase(Phosphotransferase) domain 1 188 312 - -
Seca1g03949 314 PANTHER LEUCINE RICH REPEAT KINASE 2 190 304 - -
Seca1g03949 314 Pfam Protein kinase domain 110 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03949 314 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Seca1g03949 314 Pfam Protein tyrosine and serine/threonine kinase 194 299 IPR001245 GO:0004672|GO:0006468
Seca1g03949 314 ProSiteProfiles Protein kinase domain profile. 108 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03949 314 Gene3D Ribonuclease Inhibitor 1 84 IPR032675 -
Seca1g03949 314 SUPERFAMILY L domain-like 2 69 - -
Seca1g03949 314 Gene3D Phosphorylase Kinase; domain 1 90 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03949 Seca-Chr1 119941141 119947924 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03949 5 195 Receptor kinase-like Gene Family AT4G08850 38.618 1.85e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g03949 PK_Tyr_Ser-Thr 3.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03949 - - lja:Lj5g3v2241190.1 263.848