Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03946 ATGCTTGAGACGATGAAGCTTGTAGTTGTTGTAATGGCTTTTTGTGCCTTTGTAGTTGGTACTTTACCTCATGCTGCATCCATGACTGCTGCTTCAGATGCTCTGTTGAAGTGGAAAGCCAGCCTTGACAAGCAAAGCCACACTTTGCTCTCTTCATGGACCGCTAATAGTCCTCCTTGCAGTTGGGTGGGAATTGAATGCGATGACGTGTCAAAAACTATCAACAATGTGAATCTTATAAATATTGGACTAAGAGGTACGCTTCAAAGTCTCAATTTCTCATCACTTTATAACATCCGCACCATAGATTTAAGAAACAACTCCTTGTATGGAGTTATTCCCCACCAGATTGGGGTGATGTCCACTCTGAACACTCTTGATTTGTCCATGAACAGACTATCTGGTACCATTCCCAATACCATTGGTAATTTGTCCAAACTCTCCTATCTTGATCTCAGTCACAATGATCTCTCTGGGACTATTCCATCTGAGATAATACATTTGGTTAGTCTTAATGCATTGTTAATGAGTGATAATGTTGTCAGTGGATCACTCCCTCAAGAAATAGGCAAATTGAGGAATCTATTACGACTTGATATTAGTAGATGCAATCTCAGTGGGTCTATCCCTGCTTCAATAGGATCGTTGGTCAATATATCAATTCTTTGGTTACAGGACAACCAGCTATCTGGCCACATTCCTCGTGAAATTGGCAAGTTGGTCAACCTCAGGCATTTATATCTTGGAATTAATAATCTTTCTGGCTCCATTCCTCGAGAAATTGGATTTCTCAGACAACTCGGTGAGCTTGATTTTTCTGTGAACTATCTCTCTGGCACTATCCCCTCTACAATTGGAAACCTAAGCAATTTACACTATCTTTACCTTTATGAAAACTATCTCACGGGTGGCATTCCACATGAAGTCGGAAAACTCTATTCTCTTGTCACAATTCAATTGTTACGGAACAACCTCACTGGGCCAATCCCACCTTCCATTGGTAACTTGGCCAATTTGGAAACTGTTCTCCTTTCTGAAAACAAACTCTCCGGAGCTATTCCTTCCACTATTGGAAATTTGACAAAACTCAGTGACTTAACTTTAATGATTAATGCACTAAGTGGAAACATTCCAATAGAAATGAACAAGCTAACAAATTTTGAAAAGTTTCAGTTATCTGATAACAATTTCATAGGTCATTTACCTCAGAACATTTGTGTTAGTGGAAAGTTGATAGGCTTCTCTACTAACAATAACCACTTCACGGGTCCAGTTCCAAAGAGCTTGAAAAATTGCTCCAGCCTTATGAGGGTGAGGCTTGAACAGAACCAATTGACTGGAAATATAACAGATGCTTTTGGTGTATATCCAAATTTGGACTACATTGGATTGAGTGGAAATAACTTTTATGGCCACCTTTCACCAAATTGGGGATTGTGCACAAACCTCACAACCCTTAAAATCTCCAACAATAATTTATCAGGTGGTATACCCCCAGAGCTAGGTGAGGCAACCAAGTTACATGTACTTGACTTATCTTCAAACCATCTTACAGGAAAAATTCCAGAAGACCTAGTCAAGTTAACTTCATTGATCCAACTTTTCATAAACAACAATCATCTTTCAGGAAATATTCCAACACAAATAACAGCATTGCAGGAACTTGATACCTTGAACCTTGCAGCAAATAATTTAAGTGGCTTCATCCCAAAACAACTTGGAAGTTTCCCTAAGTTGTTGCACTTGAATATGAGCCAAAATAAGTTTAAGGGAAATATTCCTGTTGACTTTGGCCAATTAAAAGTTCTTCAAAGTCTTGATCTCAGTGGGAATTCTTTAGGTGGATCAATACCAGCAATGCTTGGACAACTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGCTATTCCCTCGAGCTTTGTTGAGATGTTAAGTTTGACAACTGTTGATATATCATACAACCAACTAGAGGGTTCGATTCCAAGCATTCCAGCCTTCCAAAATGCTCCAATTGAAGAATTGAGAAATAACAAAGGCTTGTATGGTAATGTCATTGGCCTTAAGCCTTGTTCAACATCAAGTGGCAAATCTCATGATCATAAGTTTCGCAAAATCATATTGGTTGTTTTACCCATTACTTTGGGCACTCTAGTAGTAGCACTATTTGCTTTTGGGGTCTCATTTTATCTCTGTCCCACTTCAAGAACAAAAGTGTTCAAGGCTACAAAATCTCAATCTCAAGATCTGTTTGCGATATGGGGTTTCGATGGCAAAATAGTGTATGAGAACATTATTGAAGCCACTGAACAATTTGATGGCAAACATCTCATTGGGGCTGGAGGACAAGGGTGTGTTTACAAGGCAAATTTGCCTACAGGTCAAGTTGTAGCTGTGAAGAAACTTCATTCACTACCAAACGGACGAATGTCCGATCTTAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAGATCAAACATCGTAACATTGTAAAGCTTTATGGGTTTTGTTCACATTCACAGCACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGCAGTCTTGATAATATTTTAAAAGATGATGAACAAGCAACTCAATTTCATTGGGATAAGAGGGTTGATGTCATTAAAGATGTAGCAAATGCTTTATGCTATATACATTGTGAAATCTCACCTCCAATTGTTCATCGTGATATATCCAGCAAGAATGTTCTTTTGGATTTGGAATATGTGGCTCATGTCTCAGACTTTGGAACAGCTAAGCTTCTTAATTCCGATTCAACCAACTGGACCTCATTTGTAGGCACCTTCGGATATGCTGCTCCAGAACTTGCATATACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAGCAATGGAAATACTTTTTGGAAAGCACCCTGGAGATTTCATATCTTCTTCTTTGCAATCATCTTCATGGAGTATAGCGGGCTCAACACTTGACACTTTGCCATTCATAGATAAGTTGGACAACCGTCTCCCTCATCCAAAAAATCCTTTTGTTAAGGAGGTGGTGTCAATGGCAAGGATTGCAATTGCTTGCTTAAATGAAAGCCCATGTTCTCGCCCTACAATGGAGCAGGTTTGCAAGAAGCTTGCAATGTCAAAGTCATCTTCAATGGATTATGCAGTCACAGATATATAG 3198 0.3874 MLETMKLVVVVMAFCAFVVGTLPHAASMTAASDALLKWKASLDKQSHTLLSSWTANSPPCSWVGIECDDVSKTINNVNLINIGLRGTLQSLNFSSLYNIRTIDLRNNSLYGVIPHQIGVMSTLNTLDLSMNRLSGTIPNTIGNLSKLSYLDLSHNDLSGTIPSEIIHLVSLNALLMSDNVVSGSLPQEIGKLRNLLRLDISRCNLSGSIPASIGSLVNISILWLQDNQLSGHIPREIGKLVNLRHLYLGINNLSGSIPREIGFLRQLGELDFSVNYLSGTIPSTIGNLSNLHYLYLYENYLTGGIPHEVGKLYSLVTIQLLRNNLTGPIPPSIGNLANLETVLLSENKLSGAIPSTIGNLTKLSDLTLMINALSGNIPIEMNKLTNFEKFQLSDNNFIGHLPQNICVSGKLIGFSTNNNHFTGPVPKSLKNCSSLMRVRLEQNQLTGNITDAFGVYPNLDYIGLSGNNFYGHLSPNWGLCTNLTTLKISNNNLSGGIPPELGEATKLHVLDLSSNHLTGKIPEDLVKLTSLIQLFINNNHLSGNIPTQITALQELDTLNLAANNLSGFIPKQLGSFPKLLHLNMSQNKFKGNIPVDFGQLKVLQSLDLSGNSLGGSIPAMLGQLKYLETLNLSHNNLSGAIPSSFVEMLSLTTVDISYNQLEGSIPSIPAFQNAPIEELRNNKGLYGNVIGLKPCSTSSGKSHDHKFRKIILVVLPITLGTLVVALFAFGVSFYLCPTSRTKVFKATKSQSQDLFAIWGFDGKIVYENIIEATEQFDGKHLIGAGGQGCVYKANLPTGQVVAVKKLHSLPNGRMSDLKAFTSEIQALTEIKHRNIVKLYGFCSHSQHSFLVYEFLEKGSLDNILKDDEQATQFHWDKRVDVIKDVANALCYIHCEISPPIVHRDISSKNVLLDLEYVAHVSDFGTAKLLNSDSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAMEILFGKHPGDFISSSLQSSSWSIAGSTLDTLPFIDKLDNRLPHPKNPFVKEVVSMARIAIACLNESPCSRPTMEQVCKKLAMSKSSSMDYAVTDI. 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03946 1065 Gene3D Phosphorylase Kinase; domain 1 738 854 - -
Seca1g03946 1065 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 310 405 - -
Seca1g03946 1065 FunFam MDIS1-interacting receptor like kinase 2 855 1056 - -
Seca1g03946 1065 SUPERFAMILY RNI-like 353 668 - -
Seca1g03946 1065 Gene3D Transferase(Phosphotransferase) domain 1 855 1063 - -
Seca1g03946 1065 FunFam Uncharacterized protein 406 704 - -
Seca1g03946 1065 Gene3D Ribonuclease Inhibitor 185 279 IPR032675 -
Seca1g03946 1065 SUPERFAMILY Protein kinase-like (PK-like) 758 1050 IPR011009 -
Seca1g03946 1065 FunFam Nuclear pore complex protein NUP107 28 182 - -
Seca1g03946 1065 SUPERFAMILY L domain-like 32 306 - -
Seca1g03946 1065 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Seca1g03946 1065 SMART LRR_typ_2 648 673 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 336 360 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 288 312 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 480 504 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 505 528 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 240 264 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 96 120 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 600 624 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 144 168 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 552 576 IPR003591 -
Seca1g03946 1065 SMART LRR_typ_2 192 216 IPR003591 -
Seca1g03946 1065 FunFam Leucine-rich receptor-like protein kinase family protein 185 283 - -
Seca1g03946 1065 FunFam Leucine-rich repeat receptor protein kinase MSP1 739 854 - -
Seca1g03946 1065 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Seca1g03946 1065 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Seca1g03946 1065 Pfam Leucine rich repeat 122 179 IPR001611 GO:0005515
Seca1g03946 1065 Pfam Protein kinase domain 779 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03946 1065 Pfam Leucine Rich Repeat 627 646 IPR001611 GO:0005515
Seca1g03946 1065 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515
Seca1g03946 1065 ProSiteProfiles Protein kinase domain profile. 776 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03946 1065 Gene3D Ribonuclease Inhibitor 280 381 IPR032675 -
Seca1g03946 1065 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Seca1g03946 1065 Gene3D Ribonuclease Inhibitor 391 698 IPR032675 -
Seca1g03946 1065 ProSiteProfiles Leucine-rich repeat profile. 506 529 IPR001611 GO:0005515
Seca1g03946 1065 PRINTS Leucine-rich repeat signature 624 637 - -
Seca1g03946 1065 PRINTS Leucine-rich repeat signature 147 160 - -
Seca1g03946 1065 PANTHER LEUCINE RICH REPEAT KINASE 2 333 1055 - -
Seca1g03946 1065 ProSitePatterns Tyrosine protein kinases specific active-site signature. 900 912 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03946 Seca-Chr1 119907896 119911683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03946 7 948 Receptor kinase-like Gene Family AT4G08850 44.340 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca1g03946 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03946 - - gmx:100811066 1296.57