Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03921 ATGGGCACAGTAGAAATGATCATTAGGTTCCACATGAGAGCTTTGGTGTTATTCCTTTGGCTGTTTGTCCCCTCATTGGGTAAAGACCTGTTAAGCTGTGAGGCAACATCACCAGATGCCTCAGGCTACCCTTGCAATGAAAATGGGACACAAAGCTATTGTGGAACATTTGCACTCTTTCTCACAAATTCTTATTACTCTTCTCTATCCAACTTGACCTTGTACTTGGGACTCAACCGGTTTGTCATAGCAGAAACAAATGGTTTCTCTGCTGAAACTGAGTTCCTCTCACATGATCAGCCTCTTCTGATACCAATTGATTGTAAATGCAAAGGTGGATTCTTTCAGGCTGAATTAACAAAAACTAGCATCAAAGGAGAGAGCTTTTATGGTATTGCTCAAACATTGAAGGGCTTGACAACTTGCAAGGCTATCAGGAACAACAACCCAGGTGTGTCACCTTGGAATCTTGATGATAAAGTCAGATTGCTTATCCCATTGAGATGTGCCTGCCCATTTTCATCTGAAGTTAGACAAGAACCAAGGCTTTTGCTTTCTTATCCTGTAAGCAAAGGTGATACTATTTCCAATTTAGCCTCAAAGTTTAATGTAACTCAAGAAGCTATTGTTTCTGCAAACAACATTTCATCAGAAGGCCTTAGAGCAAGAAACCTTGCACCCTTTACCTCTATTCTGATTCCACTGAATGATAAACCTATCCTTGGTCCTTTGGCTAAACCCAAGGAACCCAATTCTGGTTTTCCAACAACCAGAATCCCAGTAAGTGGTCCACACAAGAAGTCAACAATGTGGAAAACTGAATTGTACATTGCACTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTAGTGGCTGTCTTTTTTGTGATCAGATTGAAGCAAAAGAAGGAGAAAGAGAATTCAGTAAAAGAAGGAGATATGGAGATGCAACATCTGAATCAAAGTATAAGAACCACCAGTGACAAGAAAGTCTCATTTGAGGGATCTCAGGATACTCTTGATGGGAAAATCATTGATGCCACACCTCGTAAGATGTTGCTGGAGACATACACTATTGAAGATATGAGAAAAGCAACAGAAGATTTTAGTTCAAGCAGTCTTATTGAAGGATCAGTATTTTATGGTCGTATAAATGGGAAAAACATGGCAATCAAAAGAACAAAGACAGAGATGGTTTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACAACCATCCCAACATACTTAGGCTACTAGGAACAAGCTTGTTAGAGGGGCCAGAGTCATTTTTGGTGTTTGAGTATGCTAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTCATTGCTTCCTGCTATTGTTTCCTTAATTGGAGCCAGAGGCTCAGAATCTGCCTTGATGTGGCCAGTGCCTTGCAGTACATGCACCATGTTATGAATCCAAGCTATGTGCATAGAAATGTGAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGCAATTTTGGGATGGCAGGGTGTGTTGAGAATGACACTGAGGATCCACATTTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTATTTGGCTCCAGAATATGTGCATCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGTCAAACTCCTATAAGCAGGCCTAATGATAAGGGTGAAGGAAGCATTTGGCTCACAGATAAAATCAAGACCATTTTGATGTCAGAAAATGTGAATGAACTAAGGGAGTGGATAGACAGTGCATTAGGGGAGAACTACTCATTTGATGCAGCTGTGACAGTGGCCAATATTGCAAGAGCTTGTGTGGAGGAAGATTCTTCTTTGAGGCCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAAGAATTACCAGAAGGGGAACAGCACATGTTAATGAGTGAAAGCAGTAGCAAACCTCTTGTGGAGGCAATAGTAAGCAATCTGTGA 2049 0.4124 MGTVEMIIRFHMRALVLFLWLFVPSLGKDLLSCEATSPDASGYPCNENGTQSYCGTFALFLTNSYYSSLSNLTLYLGLNRFVIAETNGFSAETEFLSHDQPLLIPIDCKCKGGFFQAELTKTSIKGESFYGIAQTLKGLTTCKAIRNNNPGVSPWNLDDKVRLLIPLRCACPFSSEVRQEPRLLLSYPVSKGDTISNLASKFNVTQEAIVSANNISSEGLRARNLAPFTSILIPLNDKPILGPLAKPKEPNSGFPTTRIPVSGPHKKSTMWKTELYIALAGVALGVCIALVAVFFVIRLKQKKEKENSVKEGDMEMQHLNQSIRTTSDKKVSFEGSQDTLDGKIIDATPRKMLLETYTIEDMRKATEDFSSSSLIEGSVFYGRINGKNMAIKRTKTEMVSKIDLGLFHDALHNHPNILRLLGTSLLEGPESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWSQRLRICLDVASALQYMHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNDKGEGSIWLTDKIKTILMSENVNELREWIDSALGENYSFDAAVTVANIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVEAIVSNL. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03921 682 SMART LysM_2 186 234 IPR018392 -
Seca1g03921 682 Pfam Protein kinase domain 384 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03921 682 Gene3D LysM domain 185 234 IPR036779 -
Seca1g03921 682 ProSiteProfiles Protein kinase domain profile. 365 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03921 682 SUPERFAMILY LysM domain 186 221 IPR036779 -
Seca1g03921 682 Pfam LysM domain 187 234 IPR018392 -
Seca1g03921 682 Gene3D Transferase(Phosphotransferase) domain 1 438 671 - -
Seca1g03921 682 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 34 657 - -
Seca1g03921 682 MobiDBLite consensus disorder prediction 244 265 - -
Seca1g03921 682 CDD LysM 186 217 IPR018392 -
Seca1g03921 682 Gene3D Phosphorylase Kinase; domain 1 345 437 - -
Seca1g03921 682 FunFam PTI1-like tyrosine-protein kinase 3 438 664 - -
Seca1g03921 682 SUPERFAMILY Protein kinase-like (PK-like) 352 650 IPR011009 -
Seca1g03921 682 ProSiteProfiles LysM domain profile. 185 233 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03921 Seca-Chr1 118730121 118732169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03921 42 676 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.902 2.87e-153 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca1g03921 Pkinase 5.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03921 - - gmx:100816082 1162.13