Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03914 ATGGCTGGGCAATCAGACCATGAGCTCTCACTGTTTTCAGCAGAGGAGCTTGAGTTCATTGCTGAGGATGAGATCGTAGACATTGTACCCAATCTCAAAATGGATCCTCTCTGTCTCATCTCCGGAGATTTTGGCCCATTTACGCCTCAGATTGTTACTCAAGCACCACTGTGGCTGGCTATTGCTCTCAAGAAGAGAGGCAAATGCTCTATTCGCCCTCCTCAGTGGATGTCTGTTGAGAAGTTGACTCAAGTTTTGGAGGCAGAACGAGACTCTCAAGAAATGTCGGATCAATTGCCATTTCATTATGTAGAAATCTCAAGACTTCTTTTTGATCAGTACGTTTAG 348 0.4483 MAGQSDHELSLFSAEELEFIAEDEIVDIVPNLKMDPLCLISGDFGPFTPQIVTQAPLWLAIALKKRGKCSIRPPQWMSVEKLTQVLEAERDSQEMSDQLPFHYVEISRLLFDQYV. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03914 115 Gene3D - 12 77 - -
Seca1g03914 115 Gene3D - 78 114 - -
Seca1g03914 115 Pfam GINS complex protein 54 110 IPR021151 -
Seca1g03914 115 CDD GINS_B_Psf2 13 74 - -
Seca1g03914 115 SUPERFAMILY GINS helical bundle-like 73 112 IPR036224 -
Seca1g03914 115 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Seca1g03914 115 CDD GINS_A_psf2 66 112 - -
Seca1g03914 115 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 113 IPR007257 GO:0005634|GO:0006260
Seca1g03914 115 SUPERFAMILY PriA/YqbF domain 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03914 Seca-Chr1 118411619 118417477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03914 1 113 Core DNA Replication Machinery Family AT3G12530 66.372 2.07e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03914 K10733 - gmx:100780528 198.364