Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03910 ATGAACATGAAAATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCACGTAGAATTAGGCGTGACACTGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAGTTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAGAAGTATGCTGATGTGATCATTCCACGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGCACAAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAATGTGTATGTTATTCAGTCTACATTCCAGATAAGGGGGATGCATACATTGATTCGTGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCTGATCGACTTATTCGACTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTTACTGAAAAGCAAGTGGTTACTCCAACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAGAAATTATGCGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGCGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGACTATGGAAAACAGCTTATATATGAGAAGCTTCCCAAGGATATTTCAGAACGGCATGTTTTGCTTCTTGACCCCGTCCTTGCTACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAATCCCACATTATATTTCTGAATCTCATTTCTGCTCCTGAAGGAATTCATTGTGTGTGTAAAAGGTTCCCATCATTGAAAATTGTCACATCTGAGATTGATGTTGCATTAAATGAAGAGTTTCGTGTTATCCCGGGATTGGGTGAGTTTGGTGATCGCTACTTTGGCACAGATGATTGA 906 0.3985 MNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDYGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03910 301 Pfam Phosphoribulokinase / Uridine kinase family 1 68 IPR006083 GO:0005524|GO:0016301
Seca1g03910 301 PRINTS Uridine kinase signature 26 37 - -
Seca1g03910 301 PRINTS Uridine kinase signature 48 61 - -
Seca1g03910 301 PRINTS Uridine kinase signature 12 22 - -
Seca1g03910 301 SUPERFAMILY PRTase-like 83 300 IPR029057 -
Seca1g03910 301 PANTHER URIDINE KINASE 1 210 - -
Seca1g03910 301 Pfam Uracil phosphoribosyltransferase 98 299 - -
Seca1g03910 301 CDD PRTases_typeI 157 272 IPR000836 -
Seca1g03910 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 73 IPR027417 -
Seca1g03910 301 Gene3D - 1 83 IPR027417 -
Seca1g03910 301 FunFam Uridine kinase 84 299 - -
Seca1g03910 301 Gene3D - 84 299 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03910 Seca-Chr1 118213550 118218636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03910 1 301 PRT Gene Family AT5G40870 94.684 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03910 K00876 - zju:125424257 593.193