Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03908 ATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCCAATGCCTCTGGTGGAGCTGCTGGTGCAACAGGACCATATGGACCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGTGGGAGATTTTTGAGCCATTTGGTCCAGTTGAGGTTGTCCAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAAGTTCGTTTCCCACTGCAACTGTTTTAG 264 0.4697 MVKPSEAEKNLVQSNASGGAAGATGPYGPVDRKLYVGNLHFNMTESQLWEIFEPFGPVEVVQLPLDMETGHCKGFGFVQVRFPLQLF. 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03908 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 80 IPR000504 GO:0003723
Seca1g03908 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 79 IPR000504 GO:0003723
Seca1g03908 87 Gene3D - 2 83 IPR012677 -
Seca1g03908 87 MobiDBLite consensus disorder prediction 1 27 - -
Seca1g03908 87 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 79 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca1g03908 87 SMART rrm1_1 33 87 IPR000504 GO:0003723
Seca1g03908 87 SUPERFAMILY RNA-binding domain, RBD 17 79 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03908 Seca-Chr1 118085848 118086392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03908 4 83 Eukaryotic Initiation Factors Gene Family AT4G34110 35.000 6.61e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03908 K13091 - gmx:100793461 150.984