Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03892 ATGGAAGAGGATTCTAGGAAATTTGGAGAAAGTAACAACAAAATGGAAGTTGTTGAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCAACTGAATCAGCCACTGCTGAAGAGGAATAGGACACTGTCTTCAAATCCACTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTGTTCAAGCATAATTGGAGGACCAGATCAAGAGTTGAAGTATTGCAATACATATTCTTGAAATGGACACTGGCATTCCTTGTTGGATTTCTCACTGGTATTATAGCAACTCTCATCAATCTTGCTGTTGAGAACATTGCAGGGTACAAGCTTCTTGCTGTTCTTAAATACATCCACAGAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATCAATTGTGTTTTAACATTAGTTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACGCCCAATATGTATGGTGCTACAACATTGATAGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCTTAGATCTAGGAAAAGAAGGACCCTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGACAGGGAGGCCCTGACAATCACAGGATCAAATGGCGATGGCTTCGATATTTTAACAATGATCGTGACCGTCGAGATCTTATTACCTGTGGTGCATCTTCTGGAGTTTGTGCAGCTTTCCGGGCACCTGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTATGGAGAACATTTTTTAGCACAGCTGTGGTGGTGGTGGTGCTCAGGGCCTTCATTGAAATTTGCAACTCTGGGAAATGTGGTCTTTTTGGTGCAGGAGGGCTGATCATGTTTGATGTGAGCAATGTCACTGTTAGGTACCATGTGATGGATATCATCCCTGTGGTAGTCATTGGAATCATTGGCGGGGTATTGGGAAGCCTTTATAATCATCTTCTGCACAAGGTTCTCAGACTCTACAATCTCATCAACCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTTGTACTCTTCACGTCAGCATGTCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCATTGCTTCCAGAGTCAAAGTCTGCCTGTCCAACCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTATTGATGATTCTGTTCGAAACATATTCTCAACCAACACTCCTCACGAATATCAACCCTCCTCCCTCCTAATTTTCTTTGCACTCTACTGCATATTAGGACTGTTCACTTTTGGAATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATCCTTATGGGCTCAGCTTATGGTCGTCTTCTTGGCATGTTCATGGGACCTCATACAAACATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGAATGACTGTATCCCTTTGTGTGATCTTCCTTGAGCTCACCAGCAACCTTCTCCTGCTACCAATAACGATGATTGTTCTCCTAATAGCTAAAACTGTTGGAGATTGTTTCAACCCAAGCATCTATGAAATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAACTCGTTGATGTAAAGCCAGCTGTGGTTTCCCTCCATGGAGTAGAAAAGGTAGCCAATATAGTAAATGTCTTGAAAAACACTACACATAATGGTTTCCCTGTGATGGATGATGGGGTGGTACCACCGGTAGGACAGGCCAATGAGGCAACAGAATTGCATGGACTAATTCTAAGAGCACACCTCATCCAAGCATTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGCGTTTGAAGAGGTGGCTATAACAAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCCTTTACAGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGGTCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAGGCATCGGGGGTATCCCCTGTAATTGGGATCTTGACCAGACAGGATCTACTGGCCCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGCAGAGAGAAGAGAAATTGA 2364 0.4378 MEEDSRKFGESNNKMEVVEREEEIDPESNQLNQPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHNWRTRSRVEVLQYIFLKWTLAFLVGFLTGIIATLINLAVENIAGYKLLAVLKYIHRERYLTGFLYFTGINCVLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVRYHVMDIIPVVVIGIIGGVLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSACQYGLPFLAKCTPCDSLLPESKSACPTNGRSGNFKQFNCPPGYYNDLATLLLTTIDDSVRNIFSTNTPHEYQPSSLLIFFALYCILGLFTFGIAVPSGLFLPIILMGSAYGRLLGMFMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSLHGVEKVANIVNVLKNTTHNGFPVMDDGVVPPVGQANEATELHGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREAFEEVAITSEEMEMFVDLHPLTNTTPFTVLESISVAKAMVLFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03892 787 ProSiteProfiles CBS domain profile. 714 780 IPR000644 -
Seca1g03892 787 Pfam Voltage gated chloride channel 146 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 Gene3D - 585 773 IPR046342 -
Seca1g03892 787 MobiDBLite consensus disorder prediction 1 27 - -
Seca1g03892 787 SUPERFAMILY CBS-domain pair 586 767 IPR046342 -
Seca1g03892 787 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 PRINTS Chloride channel signature 158 175 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 PRINTS Chloride channel signature 189 208 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca1g03892 787 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g03892 787 Gene3D Clc chloride channel 81 584 - -
Seca1g03892 787 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 16 772 - -
Seca1g03892 787 FunFam Chloride channel ClC3 81 401 - -
Seca1g03892 787 FunFam Chloride channel protein 583 769 - -
Seca1g03892 787 Pfam CBS domain 716 766 IPR000644 -
Seca1g03892 787 SMART cbs_1 717 770 IPR000644 -
Seca1g03892 787 SMART cbs_1 604 663 IPR000644 -
Seca1g03892 787 CDD ClC_6_like 58 582 - -
Seca1g03892 787 PRINTS Plant CLC chloride channel signature 288 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca1g03892 787 PRINTS Plant CLC chloride channel signature 63 71 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca1g03892 787 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca1g03892 787 PRINTS Plant CLC chloride channel signature 274 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca1g03892 787 PRINTS Plant CLC chloride channel signature 306 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca1g03892 787 SUPERFAMILY Clc chloride channel 67 584 IPR014743 -
Seca1g03892 787 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03892 Seca-Chr1 117715017 117719925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03892 1 782 Ion Channels AT3G27170 79.821 0.0 1263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03892 K05016 - gmx:100788620 1396.72