Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03889 ATGGAATTTAACAAGGTCTTTATGGATGGTTGTTCTACAATTTGGAGTGATGAAAATTCTCAGAGCAACCGAGAGCAGTCACCTAATGGGGATGGAAATCCGGTGGGAGACGAAGGTGGGCTGACATGGGGCGGGAGGATGATACATGAACTAACACATGATGACATTAAACGTCTGGAGTTCGCTTCTGAGGGTGAGGCATATAGTTTTTATTCGGATTATTCCAAGCATCGAGGGTTTGCTGTGAGGAAAGATGATATTGAGCGTAATAAGAATGGTGATATTGTTAAGCGATATTTAGTGTGTAATAAGGAGGGAACAAGGGAGAAGAAACACTTGGAGAGAAAGGACAGATTAAGGGAGGAGAGGCCAATTACTCGTGTGCAGTGCAGAGCAAGGATTCGTGTTTACTTAGACATGAGGAGTGGAAAATGGAAGGTGTCTGCATTCGACGACGATCATAACCATGAGTTAACTCCTCCAACGTATGTTCACATGATGCCATCTTATAGACGATTGAGTGAATCTGATAAAGCTCAAATTGATACCCTGCATGCAGCCGGTGTGAGAACTTGCCATATTATGAGTTTTATGATTGGACAGAAAGGGGGACATGATGAATTAGGTTTCTGTAAAAAGGACATTGAGCCCGTTGTGAGGTTAGAAAAGGAGAAGGTTTACATGCTAAGGAAGGGAGGTATAGGTGCTGCATGTGACTATTTATCCCGTGTTGAGGTGGTGAAGACTAAAGGCGCGCCAAGGAAGAGCAGAAGGATGACGAAAGGCAGAAGGTATTCGCACTGTAGACGAAGAGGACAAATGAAGAAAAAATGTCCTGCATTGAGTCAACGAGATGTTTTAGGGGAACCTGAAGTCGATGAATCTTCGTGGGAGAGTAATGGTACCATGGGAAATGATAAAGGAGAAGTGATGATGGTTGTGTTTCATATACAAGGTGGATTTAGTTGGGGTGATGATTTAACTCTCAGTCAAAGAGGATCGGCTGGTACAAGCAAAGGGAAGAGGCGGTGTGTGTCTCAACCATCCCAAACATCCTTCGATCGTGCTGAATTTCAGGGACTACATGACAAGGTGGGTGAAAGACAAGCCAAGCAAAGTAGACGTTCAAATGGCAAGCAGAAAAATAAATGA 1152 0.4358 MEFNKVFMDGCSTIWSDENSQSNREQSPNGDGNPVGDEGGLTWGGRMIHELTHDDIKRLEFASEGEAYSFYSDYSKHRGFAVRKDDIERNKNGDIVKRYLVCNKEGTREKKHLERKDRLREERPITRVQCRARIRVYLDMRSGKWKVSAFDDDHNHELTPPTYVHMMPSYRRLSESDKAQIDTLHAAGVRTCHIMSFMIGQKGGHDELGFCKKDIEPVVRLEKEKVYMLRKGGIGAACDYLSRVEVVKTKGAPRKSRRMTKGRRYSHCRRRGQMKKKCPALSQRDVLGEPEVDESSWESNGTMGNDKGEVMMVVFHIQGGFSWGDDLTLSQRGSAGTSKGKRRCVSQPSQTSFDRAEFQGLHDKVGERQAKQSRRSNGKQKNK. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03889 383 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 208 - -
Seca1g03889 383 MobiDBLite consensus disorder prediction 253 277 - -
Seca1g03889 383 MobiDBLite consensus disorder prediction 332 356 - -
Seca1g03889 383 MobiDBLite consensus disorder prediction 251 305 - -
Seca1g03889 383 Pfam FAR1 DNA-binding domain 69 159 IPR004330 -
Seca1g03889 383 MobiDBLite consensus disorder prediction 357 374 - -
Seca1g03889 383 MobiDBLite consensus disorder prediction 332 383 - -
Seca1g03889 383 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03889 Seca-Chr1 116721979 116724742 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03889 FAR1 6.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03889 - - ccaj:109792835 214.157