Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03867 ATGCCAATCCTTATGAGTACCAGTAGTAGTGCTCTTCATATTACTCATATATTGATGGGTAATATGGGAGCACTAATCACTTCCCTCCTTTCCTTGCAACCCCTCTCATTCATCCTCCTTCTCTTCACCATCCTCCTCTTCATCTCACTCACTGAGTTCCGGCGAGTCAAGAAACTCGGTCCGGCAACCTATCCCCTCATAGGATGCCTAATACCCTTCTATAAGAACCGTTTCCGGTTACTAGATTGGTACACTGAGCTTCTCGCTGAGTCACCCACCAACACCATAGTGGTTAACCGTTTAGGTGCACGTAGAACCGTTGTAACCGCTAACCCACACAACGTTGAGTACATTCTCAAGACAAACTTCAACAACTTCCCCAAAGGCAAGCCATTCACCGAAATCCTCGGCGATTTCCTCGGGCACGGGATATTCAACGCGGACGGCGAGCTTTGGCTGAAACAACGGAAGCTAGCGAGCCACGTGTTCTCCGCGAGGTCGTTAAGGGAGTTTGTAATGCACGCGTTGGAGGAGGAAGTGAGTGAGAGGCTATTGCCTGTGATGGAGTCACTTTCAGTTGAGAACAAGGTGGTTGATTTGCAAGAGTTGTTAGGGAGATTCTCTTTCAATGTGATTTGTAAATTCACTTTGGGGACTAATAGGTGTTGTTTGGATCCTTGTGTTCCTATTTCGCCGCTTGCAAGAGCGTTTGATGTGGCGGCGGAGATTTCGGCGAGGCGTGGAGCGGCGCCTTTGTTTTTGGTTTGGAGGATGAAGAGGTGGCTCGGAACTGGATCGGAAAGAACGCTTAGAGAAGCTGTTGAGGAGGTTCAGACACGTGTCATGAAAGTGATTGAGGAGAGAAAACAGAAGATGATGAATGTAAGAAAAGAGGAACATGGTCATGAAGATCTCTTGTCAAGGCTTATATCTGCAGGTCATGAGGAGGAGGTAATTAGAGACATGGTGATAAGCTTCATTATGGCAGGGAGGGACACAACATCAGCGGCTATGACATGGTTCTTTTGGTTGCTATCACGTTACTCTCATATGGAGCACGAGATATTGAAAGAAGCGGAACTCAATGCAAAAGGAATGTTGGATTATGAATCATTGAAGAATTTGAATTTTTTAAAGGCATGCCTATGTGAGTCTATGAGACTATATCCACCAGTGGCATGGGACTCTAAGCATGCCACAAGTGATGATATTTTGCCAGATGGCACAGTTGTGAAGGCAGGAGATAGGGTCACTTATTTTCCATATGGAATGGGGAGACTGGAAACTTTGTGGGGGAAAGACTGGTTTGAATTCAGACCAGATCGATGGTTTATTGAACCTGGGAATATTGAAGGAGCATTGAGTGAGGTTTCACCTTTCAAGTTTCCAATTTTTCAGGCTGGTCCAAGGGTGTGTCTTGGGAAAGAAATGGCTTTCATTCAAATGAAATATGTGGTGGCTTCTATTCTTCAAAGATTCAAAATTAGAATCGTCAGCTCAGACAGCCCTATTTTTGTGCCACTTCTTACGGCACACATGGCTGGCGGCTTAAAAGTATTCATACACAAGAGGGACAAACTGACTTAA 1587 0.4531 MPILMSTSSSALHITHILMGNMGALITSLLSLQPLSFILLLFTILLFISLTEFRRVKKLGPATYPLIGCLIPFYKNRFRLLDWYTELLAESPTNTIVVNRLGARRTVVTANPHNVEYILKTNFNNFPKGKPFTEILGDFLGHGIFNADGELWLKQRKLASHVFSARSLREFVMHALEEEVSERLLPVMESLSVENKVVDLQELLGRFSFNVICKFTLGTNRCCLDPCVPISPLARAFDVAAEISARRGAAPLFLVWRMKRWLGTGSERTLREAVEEVQTRVMKVIEERKQKMMNVRKEEHGHEDLLSRLISAGHEEEVIRDMVISFIMAGRDTTSAAMTWFFWLLSRYSHMEHEILKEAELNAKGMLDYESLKNLNFLKACLCESMRLYPPVAWDSKHATSDDILPDGTVVKAGDRVTYFPYGMGRLETLWGKDWFEFRPDRWFIEPGNIEGALSEVSPFKFPIFQAGPRVCLGKEMAFIQMKYVVASILQRFKIRIVSSDSPIFVPLLTAHMAGGLKVFIHKRDKLT. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03867 528 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 SUPERFAMILY Cytochrome P450 60 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 Pfam Cytochrome P450 61 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 Gene3D Cytochrome P450 55 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS E-class P450 group IV signature 472 490 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS E-class P450 group IV signature 409 423 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS E-class P450 group IV signature 320 346 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PRINTS E-class P450 group IV signature 375 391 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g03867 528 PANTHER CYTOCHROME P450 48 519 - -
Seca1g03867 528 FunFam Cytochrome P450 52 527 - -
Seca1g03867 528 CDD CYP86A 95 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03867 Seca-Chr1 115749501 115751581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03867 61 525 Cytochrome P450 AT3G01900 60.341 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03867 K20665 - gmx:100786130 771.926