Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03838 ATGGCCGATGTGTATGATCAGGTTGGAAATGTTTTTCCTGGTAGGCAAAACTGGAGACTCAAGGTTAGGGTTGTAAGGGTTTGGGAGATGTATCCCATTGATGAACCGAGCAGGACTTTCTCTGTTGAGATGGTGTTGGTTGATCAGTCGGGTGAGAGGATACAAGCATCCATCCGCAAACCTATGATGAAAAAGTTTGCAGGCAATATAATCGAAGGGGAGGCCTACAAAATGCTTTTCTTTGGGGTTGTTAGAAACCTGGGTTCTTATAGGGCAACCAAGCATGAATACAAACTCACTTTCCATCCGAAGACCAAGATATCTATGTGCGAAAGTTCCATTATTTCACTACATGGCTTGAATCTATACAATTCCGAGGACATAATGTCTACCAATGGCCAGAGCGATTATCTTGTTGATGTCATTGGCCTATTGACTGCTATATCTGCTGAGAAACGTTCTTTCCGTGATGGGCGGATGACGAGGGTTATGCAGTTGGAGCTGACAGACCACAAGGGGAAGGTGCACTGCGCTATGTTTGGTAGTTGCGTGGATATGGTTGGTGATTTGCTTAACGGAATGGGTCCAGAGTTACCCGTGCTTGTAGTTATGTTTGCGAAAGTGAAGTTATACAAAGGAGAGGTTGTGCTGCAAAACGTTCTTAATACTACTAAGATTTTATGCAACCCTCAGATATCTAAGGTTGAGGAGTTTCGGAATGGGGCTGCTGTGCATGGCATTGATATATTAGCACCGATGGGTGTTATTGCTGACGATTACAACAATAGTCCTCCAAAGGACGAGTTTTTGAAGGCGCACCCAAGGAAGACCATTAAACAACTACATGATACAGAAGAGGATGGGTGCTTCATCGTGTTAGCTTCTATAGTCAGTGTGTTGAATGATGGTAATTGGTGGTATGCTGCATGCAAGTGTCATCGGGCAGTGTCCATGGATGGTGATAGGTATTATTGCTCCTCATGCGGCATTCATGTTCGAGACGTGTCTTCCAGGTACAAGCTTAAAGTAGAGGTTTACGACGGGGAGGATACAGCTGCATTTGTTCTTTTTTATAGTGACGCTGAGATGTTAATTGGTCATAATTGCGCTGAATTATTGGCTATTACAAAGGTTGAATAA 1140 0.436 MADVYDQVGNVFPGRQNWRLKVRVVRVWEMYPIDEPSRTFSVEMVLVDQSGERIQASIRKPMMKKFAGNIIEGEAYKMLFFGVVRNLGSYRATKHEYKLTFHPKTKISMCESSIISLHGLNLYNSEDIMSTNGQSDYLVDVIGLLTAISAEKRSFRDGRMTRVMQLELTDHKGKVHCAMFGSCVDMVGDLLNGMGPELPVLVVMFAKVKLYKGEVVLQNVLNTTKILCNPQISKVEEFRNGAAVHGIDILAPMGVIADDYNNSPPKDEFLKAHPRKTIKQLHDTEEDGCFIVLASIVSVLNDGNWWYAACKCHRAVSMDGDRYYCSSCGIHVRDVSSRYKLKVEVYDGEDTAAFVLFYSDAEMLIGHNCAELLAITKVE. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03838 379 Gene3D - 5 110 IPR012340 -
Seca1g03838 379 SUPERFAMILY Nucleic acid-binding proteins 273 376 IPR012340 -
Seca1g03838 379 CDD RPA1_DBD_B_like 140 239 - -
Seca1g03838 379 CDD RPA1_DBD_C 276 375 IPR047192 -
Seca1g03838 379 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Seca1g03838 379 CDD RPA1_DBD_A_like 19 107 - -
Seca1g03838 379 Gene3D - 266 379 IPR012340 -
Seca1g03838 379 SUPERFAMILY Nucleic acid-binding proteins 121 243 IPR012340 -
Seca1g03838 379 SUPERFAMILY Nucleic acid-binding proteins 6 112 IPR012340 -
Seca1g03838 379 Gene3D - 115 246 IPR012340 -
Seca1g03838 379 Pfam Replication factor-A C terminal domain 292 376 IPR013955 -
Seca1g03838 379 PANTHER OS03G0429900 PROTEIN 9 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03838 Seca-Chr1 114705275 114708262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03838 12 372 Core DNA Replication Machinery Family AT4G19130 22.977 2.52e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03838 - - lja:Lj6g3v0884310.1 348.591