Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03837 ATGAATTACGGAGGTTCAAAAGGCTTTGGAGTTAGAAAACAATATTCAAGTAAGAGTAAGAAAGATGGTTCCATTACGTCTTACTTATATGTTTGTTGTAAGGAGGGTGAACGAAGACCAGACCCAAGGGATTATAAAATGACCAATCCAAAACCCGAGACAAGAACGAGGTGTATGGCAAGAATGAAAGTCAAACGATTCAATGAAAAATACAGAGTGATTAATTTTATTGATGATCATAATCACCCACTCCAACCACCAGAAACAGTGCATATGCAAAAAGCCTCATTTGATTTGATGAGTAAATATGTAGGAGGTAGAGAGAATCTAGGGTATACTAGACAAGATGCAAAGAATTATTTGAATTCAAGGAGGCGGCGAGATATGGCTTATGGTGAAGCCGGGTATTTGCTACAATATTTCCAACAACAATTGATAGACAATCCTTCATTCTTCCATGCATACCAAATGGATTTGGAAGAGCAAATAACAAATGTATTTTGGGCCGATGCAAGAATGTTGTTTCTTTGGTGA 534 0.3708 MNYGGSKGFGVRKQYSSKSKKDGSITSYLYVCCKEGERRPDPRDYKMTNPKPETRTRCMARMKVKRFNEKYRVINFIDDHNHPLQPPETVHMQKASFDLMSKYVGGRENLGYTRQDAKNYLNSRRRRDMAYGEAGYLLQYFQQQLIDNPSFFHAYQMDLEEQITNVFWADARMLFLW. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03837 177 Pfam FAR1 DNA-binding domain 2 86 IPR004330 -
Seca1g03837 177 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03837 Seca-Chr1 114703628 114704233 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03837 FAR1 1.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03837 - - vun:114184605 297.745