Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03831 ATGGAAGTGGAAAAGCCGAATCTGCAATTAGCCTTTCCCTTCTGGAAACCCCTTCCTCGTAGGTTCCCTCCCGATTCTCCTTTCTTCGCTTCCGGCAACCTCGAACGAGAACTTCTTGCTAAACAGGTTTTCCTTTTTTTTTTCTCTTTCATTTTCATAAATTCAAATTGTTTGCCTATCCTTTTGTGCAGGGAGGTCTTCTGTCCCATTGTCAGTTGTGGAGCTCGCTTGACTTCAGTGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCATCATGTTCTGTGTGTTCCAGGGTCTACCCAACATCACGCCTGCTCAGCATACACGTATCTGAAGCGCATGATTCTTTCTTTCAGGCAAAAGTTGCGCGTGGCTATGATATGTATGAATGCTTAGTGGAAGGTTGTGGTATGAAATTCAAAAGCTACAATAGTAGGCAGCAGCATCTAGCTGATAAGCATAAATTTCCCACCTCATTTGAGTTTTTCAAGAAGTCTCGGCCTTCAAAGAAACAGAGGCTGAAGTCTCAACGCAAACAAGTTGCCCATAAAAAGGATGCATCAGCAATGATGGAAGTGGAAAATGCAGCCATAGATGACCTTGTTTCAGCAGTCTCTAAATTGAATACTTCAGACTCCAATCCTTCCTCTATTAGCTTTGGCCGCCGCCACAAAGGTTTGTCATTTATCCCTCGAGCTGTTCAGCATGGAAGGGGATCAAACTCAGCATCGTCGATTACAAAGAGATAA 756 0.4352 MEVEKPNLQLAFPFWKPLPRRFPPDSPFFASGNLERELLAKQVFLFFFSFIFINSNCLPILLCREVFCPIVSCGARLTSVEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGMKFKSYNSRQQHLADKHKFPTSFEFFKKSRPSKKQRLKSQRKQVAHKKDASAMMEVENAAIDDLVSAVSKLNTSDSNPSSISFGRRHKGLSFIPRAVQHGRGSNSASSITKR. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03831 251 SMART c2h2final6 131 156 IPR013087 -
Seca1g03831 251 SMART c2h2final6 66 91 IPR013087 -
Seca1g03831 251 SMART c2h2final6 93 116 IPR013087 -
Seca1g03831 251 ProSitePatterns Zinc finger C2H2 type domain signature. 68 91 IPR013087 -
Seca1g03831 251 ProSitePatterns Zinc finger C2H2 type domain signature. 133 156 IPR013087 -
Seca1g03831 251 PANTHER UNCHARACTERIZED 9 239 IPR039258 -
Seca1g03831 251 MobiDBLite consensus disorder prediction 169 190 - -
Seca1g03831 251 ProSitePatterns Zinc finger C2H2 type domain signature. 95 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03831 Seca-Chr1 114341331 114344197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03831 9 247 C2H2 Transcription Factor Family AT5G14140 62.097 4.54e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g03831 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03831 - - gmx:100819557 374.4