Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03804 ATGGATTGGGACTTGAAGGTGTTTGATTGGGATCCATCTGGGTTGGAGTTAGCTAACAGTGGCTTTGAAGGACAGAAGAATGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGCTTCTGATTCAGTGGAAAAATCAGCCTCAGATACTACTCCTAAGGACCAAAAAGACTCAAAATCTGTGTCATCTCCTTCTGGATCATCAAAAAGATCACGTCTTCAGAATGGATCACAGAATATGTGTTGCTCAGTTGATGGATGCAATTCTGACCTCAGTGATTGCAGAGAGTATCATAAGCGCCACAGGGTCTGTGAAAAGCACTCCAAAACCCCTGTTGTGTTGGTAGGGGGAAAGCAGCAGAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAGCGTCTTGATGGGCATAATAGGCGCAGGAGGAAACCTCAACCACCATCCCTTTTCATGGCAGCTGAGAAATTGATGTACAATTACAAAGGTTTGTGTGTGGCATCCCCAGATTCTAATATGATGACTTCTTTATGTTGA 570 0.4491 MDWDLKVFDWDPSGLELANSGFEGQKNEAASVDLRLGEASDSVEKSASDTTPKDQKDSKSVSSPSGSSKRSRLQNGSQNMCCSVDGCNSDLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKLMYNYKGLCVASPDSNMMTSLC. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03804 189 MobiDBLite consensus disorder prediction 38 56 - -
Seca1g03804 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 159 IPR044817 GO:0003677
Seca1g03804 189 MobiDBLite consensus disorder prediction 57 77 - -
Seca1g03804 189 MobiDBLite consensus disorder prediction 19 77 - -
Seca1g03804 189 ProSiteProfiles Zinc finger SBP-type profile. 79 156 IPR004333 GO:0003677
Seca1g03804 189 FunFam Squamosa promoter-binding-like protein 14 73 143 - -
Seca1g03804 189 SUPERFAMILY SBT domain 80 161 IPR036893 GO:0003677|GO:0005634
Seca1g03804 189 Pfam SBP domain 82 155 IPR004333 GO:0003677
Seca1g03804 189 Gene3D - 73 143 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03804 Seca-Chr1 113158008 113159619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03804 1 158 SBP-box Gene Family AT5G50670 49.153 5.55e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca1g03804 SBP 5.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03804 - - lja:Lj1g3v3847150.2 310.842