Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03800 ATGGAGAATTATTCCATGTTGTTTCCTTGTCCTCCTTCTTCTAATTCAAGCTACCCAATTTCAACAAGTGCTATTGTGGGAACCTCTCAGCATGGTTCCAATGCATTTCTGGGTTTAAGGGCTGATAGTAATGAAATTGGTGAGAATAGATCATCATCAGTTGCAGAAGGTTCTAGAGATGGCTTATTGTCTCAGATCAGTGGGAGCAATATTAATAATGTGACTTCTGATCCTCAACAACTAGGTGGTGGTGGTGGTTCAGGTAATATTAATAGTAATAATAATAAAAAGAAAGGAGAGAAAAAAGTTAGAAAGCCTAGATATGCTTTTCAAACAAGGAGTCAGGTTGATATACTTGATGATGGTTATCGATGGAGGAAATATGGCCAAAAAGCTGTTAAAAACAACAAATTCCCAAGGAGCTACTATAGGTGCACACATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGCCTAACCAAAGACGAGGGGGTAGTAGTGACCACTTATGAGGGAGTGCACACCCACCCAATTGAGAAAACAACAGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 597 0.392 MENYSMLFPCPPSSNSSYPISTSAIVGTSQHGSNAFLGLRADSNEIGENRSSSVAEGSRDGLLSQISGSNINNVTSDPQQLGGGGGSGNINSNNNKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03800 198 SUPERFAMILY WRKY DNA-binding domain 111 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g03800 198 ProSiteProfiles WRKY domain profile. 114 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g03800 198 MobiDBLite consensus disorder prediction 64 107 - -
Seca1g03800 198 SMART WRKY_cls 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g03800 198 Gene3D WRKY domain 104 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g03800 198 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 50 181 IPR044810 GO:0003700
Seca1g03800 198 MobiDBLite consensus disorder prediction 64 94 - -
Seca1g03800 198 FunFam WRKY transcription factor 57 105 179 - -
Seca1g03800 198 Pfam WRKY DNA -binding domain 120 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03800 Seca-Chr1 112898853 112901797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03800 107 198 WRKY Transcription Factor Family AT5G13080 88.043 5.80e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g03800 WRKY 1.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03800 - - pvu:PHAVU_001G088200g 259.61