Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03789 ATGGATCCCAAGGGCTCAAAGCAGCCACCACAGGCACAGGATGTACCCAACTTCCTGAGCCTCCCGCAGCCACAACAACAAGAAGGGAACAACAACAACAACAACAACATGGGAGAGAACAAGCCAGCAGAGGTGAAGGATTTCCAGATTGTGATCGCTGAGAAAGATGAGAGCAAGAAGCAGTTAGCACCAAAGAGGAGTTCCAACAAGGATAGGCACACAAAGGTTGAAGGTAGGGGAAGGAGGATAAGGATGCCAGCTCTATGTGCAGCTAGAATCTTTCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTTCTTCAGCAGGCTGAACCATCTATAATAGCAGCTACTGGGACTGGGACAATTCCAGCATCTGCTTTGGCTGCTGCTGGTAACTCTGTTTCACAACAGGGGACCTCTTTATCTGCTGGGTTGCACCAAAAAATTGATGAATTGGGAGGGTCCAATATTGGGTCAGGGAGTAGGACCAGCTGGGCAATGGTTGGAGGAAATTTAGGGAGACCCCATGTGGCCACTGGTTTATGGCCCCATGCTACTGGATTTGGATTTCAGTCATCATCTGGTCCATCTACAGCTAGTTTGGCCACTGATGGTTCAAATTACCTGCAAAAGATTGGCTTCCCTGGGTTTGACTTGCCTGCCACCAACATGGGTCCTATGAGTTTCACTTCAATTTTGGGTGGTGCTGGGGGGAACCAGCAGATTCCTGGTTTGGAGCTGGGGTTGTCTCAAGATGGACATATTGGGGTCTTGAATCCACAAGCCTTGAGCCAGATTTATCAGCAGATGGGTCAAGGTAGAGTACACCAGCATCAGCATCAGCAGCAGCAGCCTCCTACTAAGGATGATTCTCAAGTACTCAAGTCTCCAGATACAGGTGGAATTGCAGGGCCAGATAGGTTGGCTGCTTTGGTCTGGCCTTAA 966 0.4928 MDPKGSKQPPQAQDVPNFLSLPQPQQQEGNNNNNNNMGENKPAEVKDFQIVIAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSQQGTSLSAGLHQKIDELGGSNIGSGSRTSWAMVGGNLGRPHVATGLWPHATGFGFQSSSGPSTASLATDGSNYLQKIGFPGFDLPATNMGPMSFTSILGGAGGNQQIPGLELGLSQDGHIGVLNPQALSQIYQQMGQGRVHQHQHQQQQPPTKDDSQVLKSPDTGGIAGPDRLAALVWP. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03789 321 ProSiteProfiles TCP domain profile. 69 123 IPR017887 -
Seca1g03789 321 MobiDBLite consensus disorder prediction 276 313 - -
Seca1g03789 321 Pfam TCP family transcription factor 68 153 IPR017887 -
Seca1g03789 321 MobiDBLite consensus disorder prediction 1 79 - -
Seca1g03789 321 MobiDBLite consensus disorder prediction 276 301 - -
Seca1g03789 321 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 258 IPR005333 GO:0003700
Seca1g03789 321 MobiDBLite consensus disorder prediction 48 79 - -
Seca1g03789 321 MobiDBLite consensus disorder prediction 10 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03789 Seca-Chr1 112258569 112261853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03789 1 274 TCP Transcription Factor Family AT3G27010 56.401 5.04e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca1g03789 TCP 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03789 - - jre:108984550 459.144