Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03787 ATGGATTCTGTTGATACCAATGGGCAACATCTTGTTAATGAATCTGGTAATAAGGATTCACATGTTGGTGATTCAATTGCTAATAGTGGTCAAGAACCTTACATTGGAATGGAATTTGAGTCAAGGGAAAATGCTCATTTATTCTACATTCGTCATGCTAAATATGTTGGATTTGGTGTATCAACTAAAACCAGCTGCCGTTCAAAAATTTCTAGGGAGTTTATTGATGTGATACATGCTTGCTCAAGACATGGGAGAAAACGAGAATCATCTGCACTTAATCCACGTCCTTGTGTCAAGGTGGAATGTGAGGCTAGCTTACGTATTAAAAGAAATTGTGATGGAAAATGGGTTGTTCATAGCTTCATCAAAGATCATAATCATGAACTTTTTCCCACACATGCACATTATTTTCCTTGTCATAGAGGCATCAATCAAGCTCAAAAGCAATGCATTGAAACTTTGCAACATGTTGGAGTGAGAACAAGCAAAATTTATGCCACAATGGCCAAACAACATGGAGGATATGAAAACATTGGGTGCTTGGAGAAAGATACTAGAAATCATTTGGATAAGGGTCGTCGATTGGCTTTAGAGTCAGGAGATGCAAATGCAATGTTGGAGTGTTTTATGCTCATGCAAGAAGAAAATCCAAGATTTTTTTATGCAATTGATTTGGATGACGAAGATCGTGTGAAAAATATATTTTGGGTGGATGCAAAAGGTAGAGATGATTATGAAGAGTTTGGAGATGTAATTTCATTTGATACAACATACATCACAAATAAGTATAAAATGCCATTTGCTCCATTCATTGGGGTGAATAATCACTTTCAGTCAAGATTACTTGGTTGTGCATTACTAGCAGATGAGTCTTCAAAAACTTTCACATGGTTGATGAAAACATGGCTTAGAGCTATGTGTGGCAAGCCTCCAAATGCAATAATTACAGATCAAGATAAAGCAGTGAAATCAACTATTAAAGAGGTGTTTCCAAGTGCTCGACATCGCTTTTGTCTTTGGCATATACTGAGAAAGGTACCTGAGAAGCTAGGTCATGTATTAAGAAAACATGAAGATTTCATGACATTTCTTAACTCATGCATTTACAAGTCTTGGTCAAAGAAGCAATTTGAAGATAGATGGCAAGAAATGCTTGAAAAATTTGAACTATTGGAAGACGAATGGATTCAATCTTTATTTGAAGAACGTGAGCATTGGGTTCCTGTTTACATGAAGGATACATTTTTTGGTGGCATGTCAACAACTCAAAGATCAGAGAGCATCAACTCATTTTTTGACAAATATGTGAGTAAAAAAACTTCATTAAAGGAATTTGTTGAAAAATATAAAGTTGCTTTACAAGATAGAGAAGAGGCAGAAATGCAAGCTGATTTCAACACATGGCACAAGCAACCTATTCTTAAGACTCCGTCTCCTTTTGAAAAGCAAATGTCAATGATTTATACACATGAAGTCTTCAAGAAATTCCAGGTTGAAATTCTAGGATTATCTGGATGTCATTTTATGAAAAAGGATGAAAGTGGTCATATTACCACTCTTAAAATCCTAGACTTCCAAAAAGATGAAGAATTTGTTGTAGAGTGGAATGCATCAAAAGCAGAAATTTCTTGCTTATGTCGTTTATTTGAGTATAGTGGATATCTTTATAGACATTCATTAATGGCACTCCAAGTTGTTGGTGTTTTTGTTGTCCCATCAAGCTATATATTGAGAAGATGGACCAAAGATATTAGAAGCAAGCATCTTAAAAGAAAAATGAATGATAATGCCTACACCAAAAAGGAGAGATATGATCACTTATATCAAAAGGCCTTTGAATTGCTTGAGGAAGGATCATTGAGTAATGACAGTTGCAATTTTGCTAGTCATGCACTTGAAGAGGCGTTGAAACGATGTGCAAGCATTAATCAATCTTTGAAAATTGATAAAGAAAAAGTTGGTAAGAGCATTGTACATGAGAAGCCAGTACATGATCCTGTAGTGTCAAAAACAAAAGGGGCCCCAAGAAGAATAAAGAGTGGGATTGAGAAAGGTCGTAAGAAAACATCAAGTGGTAAAAGGAAAAAGTCTGGATTTGTTGAAAAAGAAGCAATCAGTACACCTAATGTTCTCAATGATCAAGTGGTGGCTGATCAATGA 2163 0.3551 MDSVDTNGQHLVNESGNKDSHVGDSIANSGQEPYIGMEFESRENAHLFYIRHAKYVGFGVSTKTSCRSKISREFIDVIHACSRHGRKRESSALNPRPCVKVECEASLRIKRNCDGKWVVHSFIKDHNHELFPTHAHYFPCHRGINQAQKQCIETLQHVGVRTSKIYATMAKQHGGYENIGCLEKDTRNHLDKGRRLALESGDANAMLECFMLMQEENPRFFYAIDLDDEDRVKNIFWVDAKGRDDYEEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADESSKTFTWLMKTWLRAMCGKPPNAIITDQDKAVKSTIKEVFPSARHRFCLWHILRKVPEKLGHVLRKHEDFMTFLNSCIYKSWSKKQFEDRWQEMLEKFELLEDEWIQSLFEEREHWVPVYMKDTFFGGMSTTQRSESINSFFDKYVSKKTSLKEFVEKYKVALQDREEAEMQADFNTWHKQPILKTPSPFEKQMSMIYTHEVFKKFQVEILGLSGCHFMKKDESGHITTLKILDFQKDEEFVVEWNASKAEISCLCRLFEYSGYLYRHSLMALQVVGVFVVPSSYILRRWTKDIRSKHLKRKMNDNAYTKKERYDHLYQKAFELLEEGSLSNDSCNFASHALEEALKRCASINQSLKIDKEKVGKSIVHEKPVHDPVVSKTKGAPRRIKSGIEKGRKKTSSGKRKKSGFVEKEAISTPNVLNDQVVADQ. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03787 720 Coils Coil 443 463 - -
Seca1g03787 720 MobiDBLite consensus disorder prediction 668 706 - -
Seca1g03787 720 SMART 26again6 543 570 IPR006564 GO:0008270
Seca1g03787 720 Pfam FAR1 DNA-binding domain 48 132 IPR004330 -
Seca1g03787 720 Coils Coil 375 395 - -
Seca1g03787 720 MobiDBLite consensus disorder prediction 1 27 - -
Seca1g03787 720 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 641 IPR031052 GO:0006355
Seca1g03787 720 Pfam MULE transposase domain 252 345 IPR018289 -
Seca1g03787 720 MobiDBLite consensus disorder prediction 668 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03787 Seca-Chr1 112207588 112211113 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03787 MULE 8.8e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03787 - - mtr:112418473 1085.48