Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03786 ATGGAAGACACGGGTAATAGGGTTAATGAGGGTGAAGCTGAAGATGCAAATAATTTGAAGTCCCCTGATGAAGAAAATGCTTGTTCTGTTGAGGATGTTATTGATGTATACAAAAGGATTTCTGAGTTAACTGATGATGACATTAGAATCCTTGAGTTCGATTCTGAACTGGATGGGTATAATTTTTATTCTGAGTATGCTAAATTCAAAGGTTTTGCGGTTAGGAAAGATGATGTTTATCGTGATCGTAATAGGTTAATTACCATGAGGCAATTAGTTTGTAATAGACAAGGGGAAAGGAGTGAGAAGCATTTAAATAGGGCTGACAGAATTAGGGAAGCTAAGGCAATTACTCGTACCAATTGTCTTGCAAGGATTCGACTGTATTTTGATAAAAACAGTGGGAAGTGGAAGGTTGGAATTTTTGAGCCAGAACACAATCATGAGCTTACTCCTTCAAATATGGTTCATTTGATGCCTGCATATCGTGGGTTGAGTGCTGCTGATAAGGCACAAGTAAATAGTCTTCACTTATATGGTGTTAGGACTTGTCATATAATGGGTTTAATAATGGGTCAGAAAGGTGGTCACTCAGATTTGGGTTTTTGTAAGCAGGACTTGTACAATCACATTGACAAGGAAAATAGGGCCAAAATACAGGATGGAGATGCTTTTGCTGCTTTGTGCTATCTTCAAGTTAATTCTTTTATCAAGAGATATATACAGAGTAAAAACAGTCTCGTTGATTTTCTACACAATTTTGAAAGAGCTTTGAATGAATATAGGCACAATGAATTAGCTTCTGATTTTAAATCCTCATACACCCAGCCAGTTCTGACAACTGCTTTGGAAAAGTATGAAGTTAATGCGTGTAATGTTTACACCAGGAATAAGTTTTTTGAAATTAGAAAGCAAATTGAGAAAGTTGCTGCTTTGAATATGATTGAAAGGACTGAGGTAGGTAATGTTGTCACATTGAAGATGAATAAATTTGGAAGTCCTGATTCTGTACACCTTGTTTTGTTTGATAAGTCTGTTGGTAAGTTTGTATGTGATTGTCGGTTGTTTGAGTCATGCGGTTTACCATGTTCACATATCTTTTGTGCTATGAAGCATGAGCAAATAGAGTCAATTCCTCCTTCACTCATCTGCAAAAGGTGGACTAAGTTTTCTAAGGTTGATTATATTTATGCAATTTATGCTGATGAGGGTGACACTACAAAGAAGGAAGTGTTGAGGTCCGGTGCTGTGGGTGCTGCTTGTAATAGGCTTAACAAGGCTGCACATAAAGATCCTCATAATTTTGTGAAAAACATTGAGGCCATTCATCAATTAGCAGACCAGATGGAAAGGCAAGATGAGGTTGATGTCAACATTGCTGACATATCAAGGGTTGTCCGTGATCCAACTATTGTTAAAACCAAAGGTGCACCCCGTAAGAGTAAGAAAATCATGAAAAGAAGAAAATGCTCTTATTGTAAGCGTGTTGGGCATACAATCAGGACTTGTTCCAAGTTCTCAACGCGAGATCAGCTGCATACTGTAGAAGAAGAGGATTCTCCAGTTGAGAGTGATGGAGAATCAAGAGATTTAACGGTAATGCCTTGTGATATTGAATGTTGTATGAGATTTAGATTTATTGTCATAAACTAA 1653 0.3727 MEDTGNRVNEGEAEDANNLKSPDEENACSVEDVIDVYKRISELTDDDIRILEFDSELDGYNFYSEYAKFKGFAVRKDDVYRDRNRLITMRQLVCNRQGERSEKHLNRADRIREAKAITRTNCLARIRLYFDKNSGKWKVGIFEPEHNHELTPSNMVHLMPAYRGLSAADKAQVNSLHLYGVRTCHIMGLIMGQKGGHSDLGFCKQDLYNHIDKENRAKIQDGDAFAALCYLQVNSFIKRYIQSKNSLVDFLHNFERALNEYRHNELASDFKSSYTQPVLTTALEKYEVNACNVYTRNKFFEIRKQIEKVAALNMIERTEVGNVVTLKMNKFGSPDSVHLVLFDKSVGKFVCDCRLFESCGLPCSHIFCAMKHEQIESIPPSLICKRWTKFSKVDYIYAIYADEGDTTKKEVLRSGAVGAACNRLNKAAHKDPHNFVKNIEAIHQLADQMERQDEVDVNIADISRVVRDPTIVKTKGAPRKSKKIMKRRKCSYCKRVGHTIRTCSKFSTRDQLHTVEEEDSPVESDGESRDLTVMPCDIECCMRFRFIVIN. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03786 550 Pfam FAR1 DNA-binding domain 61 151 IPR004330 -
Seca1g03786 550 SMART 26again6 349 376 IPR006564 GO:0008270
Seca1g03786 550 PANTHER OS01G0519700 PROTEIN 244 499 - -
Seca1g03786 550 ProSiteProfiles Zinc finger SWIM-type profile. 342 374 IPR007527 GO:0008270
Seca1g03786 550 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03786 Seca-Chr1 112151677 112153963 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g03786 FAR1 8.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03786 - - aip:107640898 286.189