Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03777 ACCTCTCACCTTCACATTATATTTATTTTCTGCCATTGCTTTGTTTTGAACACCCAATACTCCATCCAAATCATACATATATACCTGACAACTTCTCTTAAAGAGACTCAGATCCTTATCATATTGTGTGAGGGACACCAGGTTAAGGAGCTTGAGATGGAAAAGTTAAATGAAAATGGTTTCCAACTTAGTGTGAAGCTAAGTGAACCAACTCTAGTTGCTCCTGCAGAAGAAACAAAGAAAGGCATGTACTTCCTATCTAACCTTGACCAGAACATTGCTGTTATTGTTAGAACTGTTTATTGCTTCAAAACGCCTGAGAAAGGAAATGAGAAGGCTGTAGAAGTGATCAAGAATGCCTTGAAGAAGGTTCTTGTTCACTATTACCCTCTTGCTGGGAGATTGAGTATAAGCTCAGAGGGTAAACTCATAGTAGACTGCACAGGGGAGGGTGCCCTGTTTGTGGAGGCTGGGGCAAACTGTTCAATGGAAGAGATTGGTGACATCACAAAGCCAGACCCAGGGACTCTTGGTAAGCTGGTTTATGACATTCCTGGAGCAAAGCACATCCTTCAGATGCCTCCTTTGGTTGCCCAGGTGACCAAGTTTAAATGTGGAGGCTTTGCTCTTGGGTTGTGCATGAATCACTGTATGTTTGATGGCATTGGTGCTATGGAGTTTGTGAACTCTTGGGGTGAAGTAGCCAGAGGCCTACCACTCTCTATTCCTCCAATTCTAGACAGAAGCATACTCAAGGCTCGTAACCCACCTAAGATAGAGCATTTGCACCAAGAATTTGCTGATATTAAAGACAAGTCCAGCACTAATAGCTTGTATGAAGATGAGATGGTCTACAGGTCCTTCTGTTTTGATCCTGAGAAGCTAAAGCAACTGAAGATGAAAGCTATGGAAGATGGGGCTCTTGAATCTTGCACAACTTTTGAAGTTCTCTCAGCATTTGTATGGATAGCTCGAACCAAAGCACTAAAAATGTTGCCAGATCAGGAAACAAAGCTCCTTTTTTCTGTTGATGGAAGGGCTAAGTTTAACCCTCCTCTTCCAAAAGGGTACTGTGGAAATGGGATTGTGCTAACAAATTCTGTATGTCAAGCAGGTGAACTAACAGATAAGCCCTTCTCATATGCTGTGAGGCTCATTCAAGATGCAATCAAGATGGTCACAGACAGTTACATGAGATCAGCTATAGATTATTTTGAGGTGACAAGAGCTAGACCTTCTTTGGCTTGCACCCTTTTGATCACAACTTGGTCTAGGCTGTCCTTCCATACCACTGATTTTGGATGGGGAGAACCTGTTCTTTCAGGGCCAGTGTCACTGCCAGAGAAGGAAGTGATTTTGTTCCTTTCTCATGGCCAAGAGAGGAGAAACATCAATGTGCTTCTGGGTTTGCCAGCTCCTGTCATGAAGATCTTCCAGGATTTGATGCAGATATAG 1455 0.4289 TSHLHIIFIFCHCFVLNTQYSIQIIHIYLTTSLKETQILIILCEGHQVKELEMEKLNENGFQLSVKLSEPTLVAPAEETKKGMYFLSNLDQNIAVIVRTVYCFKTPEKGNEKAVEVIKNALKKVLVHYYPLAGRLSISSEGKLIVDCTGEGALFVEAGANCSMEEIGDITKPDPGTLGKLVYDIPGAKHILQMPPLVAQVTKFKCGGFALGLCMNHCMFDGIGAMEFVNSWGEVARGLPLSIPPILDRSILKARNPPKIEHLHQEFADIKDKSSTNSLYEDEMVYRSFCFDPEKLKQLKMKAMEDGALESCTTFEVLSAFVWIARTKALKMLPDQETKLLFSVDGRAKFNPPLPKGYCGNGIVLTNSVCQAGELTDKPFSYAVRLIQDAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLSFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRNINVLLGLPAPVMKIFQDLMQI. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03777 484 Gene3D - 266 483 IPR023213 -
Seca1g03777 484 FunFam Spermidine hydroxycinnamoyl transferase 63 266 - -
Seca1g03777 484 Pfam Transferase family 64 481 - -
Seca1g03777 484 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 71 479 - -
Seca1g03777 484 Gene3D - 60 265 IPR023213 -
Seca1g03777 484 FunFam Tryptamine hydroxycinnamoyl transferase 270 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03777 Seca-Chr1 111798281 111801064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03777 63 482 Monolignol Biosynthesis Gene Families AT5G48930 34.722 2.48e-83 262