Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03770 ATGATCAATTCAATGTGTGGAAGCTCAGTGTCCCTGAAGAGTGAGAACTCTAGAACCAAACTTCAACCCACTTCTTCAAATGACTCAGTTTTACAGTCTAAGAAAAATGCCACTCAATCCTCTGCTGATTTAGAGCAAACTAGTCTAACCCCACCAAGCTTAAACCTTCCTGCACTCAAATTTGACTTGGATGGAGATGTGGAAGTCCAATCACCAGACAGTTCAATGTGGGAGTCTTTTTTCTCTGATCAGTTAGATGCTGATTTCATGATCTCTTCCCCAGTGAGGAACGTTCCTTCCCCACAAGCTTCTACCTACAACTGCAACTATAACTATGCTCAGGGAATGCAAGGTCAGAGTCTTTCAGGGTGTTCACCACCACGTTTTACATCCCAAATTGGAGCCTTTAACAGCAGCCACAAAGGGAAAGGACTTAGCCCACTTCACAGGGTGTTTAACTCACCAAACAACCAGTACATGCAGCATGTTGAAAATCTTTCACTGCCAGCAATAGAAGAGTTCTTGGAGGACTATCAAGGAGATGAGTTAGGTGGTGGAGGATATTCATCAAACAAGTTGTCTTCTGATATTGGAAACTCATCTGAATGCTTTGACATGCAAACTCCAATTCCATCCATCTTGGACAGCTTGAATATGCCCAATTCCTCAAGGTACTGTGAATCAGTTAGTGAAGAATCTTCAGTGCATGGTGGTTCCTCTCAACTGTCCCAAGAGAGTGACATCTATCACCACATGGGGTCCATGGCTAGTGCATCCCTCTCTCAAGCTCTCCAACAAGAACGCTACCATGAGAAACAGCAAAAGCAGCAAACACAACAACTGCAACAACAAAGCTTGACAGTGCCTATTCCAATCGGAATTGACCAGGAGCAAGACAGTGGCCTCCAACTGGTGCACCTTCTTCTAGCTTGTGCCGAAGCAGTAGCCAAAGAAGAATACATGCTAGCAAGAAGGTACCTGCACCATCTGAACAGAGTAGTGTCACCACTAGGCGACTCCATGCAGCGCGTTGCTTCATGCTTCACAGAATCACTAAGCGCAAGACTCGCCGCAACACTCACCACCACCAAGCCACCAACAACAACCTCCAACACCACCAAATCACCACCACCACCATCATCATCATCATGTCTCTCACCCTTCCCATCAAACTCCATAGAAGTCCTCAAGATCTACCAAATCGTCTACCAAGCCTGTCCATACATCAAATTCGCCCACTTCACCGCCAATCAAGCCATCTTCGAAGCCTTCGAGACCGAAGAGCGCGTCCACATCATCGATCTTGACATCCTCCAGGGCTACCAGTGGCCAGCCTTCATGCAAGCCCTCGCCGCACGTCCCGGCGGCGCTCCGTTCCTCCGAATAACCGGCGTCGGCCCCTGCATCGAATCCGTTAGAGAAACCGGACGATGCTTGACAGAATTAGCACACTCGCTTCGAATCCCCTTCGAATTCCACCCTGTAGGGGAGCAATTGGAGGATCTGAAACCGCACATGTTTAACCGTCGCGTTGGAGAGGCCTTGGCGGTTAACACCGTTAACCGTCTCCACAGAGTTCCCGGTAACCACCTTGGGAGCTTGCTTTCCATGATAAGGGACCAAGCACCTAACATAGTGACACTTGTGGAGCAAGAGGCGAGCCACAACGGGCCTTATTTTCTTGGAAGGTTTCTAGAGGCGCTGCATTATTACTCGGCGATTTTTGATTCGTTGGATGCGACGTTTCCACCGGATTCGGCGCAGAGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATAAGGAACATTGTAGCGTGTGAGGGGCCTGAGAGGATAGAGAGGCATGAGAGGTTGGAGAAGTGGAGGAAGATCATGGAAGGGAAAGGGTTCAAAGGTGTGCCGCTGAGTCCTAACGCGGTGACTCAGTCTAGGATATTGCTGGGTTTGTATTCGTGTGATGGGTATCGGTTGACAGAGGATAAAGGCTGCTTGTTGCTTGGGTGGCAGGATAGAGCCATAATAGCTGCATCTGCGTGGCGCTGCTGA 2049 0.4905 MINSMCGSSVSLKSENSRTKLQPTSSNDSVLQSKKNATQSSADLEQTSLTPPSLNLPALKFDLDGDVEVQSPDSSMWESFFSDQLDADFMISSPVRNVPSPQASTYNCNYNYAQGMQGQSLSGCSPPRFTSQIGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGDELGGGGYSSNKLSSDIGNSSECFDMQTPIPSILDSLNMPNSSRYCESVSEESSVHGGSSQLSQESDIYHHMGSMASASLSQALQQERYHEKQQKQQTQQLQQQSLTVPIPIGIDQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVSPLGDSMQRVASCFTESLSARLAATLTTTKPPTTTSNTTKSPPPPSSSSCLSPFPSNSIEVLKIYQIVYQACPYIKFAHFTANQAIFEAFETEERVHIIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGSLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGPERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03770 682 MobiDBLite consensus disorder prediction 1 53 - -
Seca1g03770 682 MobiDBLite consensus disorder prediction 360 385 - -
Seca1g03770 682 Pfam GRAS domain family 304 681 IPR005202 -
Seca1g03770 682 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 254 676 IPR005202 -
Seca1g03770 682 MobiDBLite consensus disorder prediction 260 280 - -
Seca1g03770 682 ProSiteProfiles GRAS family profile. 295 681 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03770 Seca-Chr1 111484351 111487892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03770 298 682 GRAS Transcription Factor Family AT1G66350 44.246 3.26e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca1g03770 GRAS 4.7e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03770 - - gmx:100805039 1028.85