Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03748 ATGGGTCGTTGCCCGTGTTTTGGGTTGGGGAGGAAGGCCAAAGGGAAGAACATTAAGGAAAAGGAGGAGGAAAAGAACCTTAAATCCGCAGGGTCTGTCTCTGGAAGATCTTCAGGACGCAGATCAGAAGAAACTCCAACAGAGGATACTGACAGTTCTAATAAGGCTCAGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGATTTGGAACTGTTTACAAAGGAAAGATAGAGAAAACGAATCAGATTGTAGCTGTTAAAAGACTTGATACAACTGGTGTTCAAGGGGAGAAAGAATTTCTAGTGGAGGTTCTCATGCTTTCTCTTCTTCACCATGCCAACCTTGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAATACATGCCTTTGGGATCCTTAGAATCTCATCTCCATGATCTTTCACCTGACAAAGAACCACTTGATTGGAATACCAGAATGATGATAGCTGCTGGGTCAGCAAGAGGACTAAATTATCTGCATCATGAAGCAAAGCCTTCTGTTATATACAGGGATCTAAAATCGTCCAACATACTATTGGGTGAAGGTTTCCATGCAAAACTTTCTGATTTTGGGCTTGCAAAATTTGGTCCAACTGGAGACCAATCATTTGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCAACTAGTGGAAAATTAACAATGAGATCTGATATCTACAGTTTTGGGGTTGTGTTATTGGAGCTAATTACAGGACGTAGAGCATATGATGATACCCGTGGCCCTGAAAAGCATCTTGTTGACTGGGCACGCCCCATGTTTAGAGACAAAAGGAATTTTCCAAGATTGGCAGATCCGCATTTGCAAGGTCACTATCCAGGATCTAGTCTAAAGATGGCCATTGAATTGGCATCCATGTGTCTTCGAGAAGAGCCACGTTATCGGCCTGATGCAGGTGACATAGTGCTAGCTCTAGATTACTTGTCATCCAAGAAGTATGTCTCAAAGGTATCTAGCACAGTTAACATAGGAGGGATGGATAATGGTGAATCACCAAAAGAAACACCTATGACCTTGGCTAAAGACTCACAAAGAGAGCAGGCTGTTGCAGAAGCCAAGCTGTGGGGGGAGACATGGAGACATAAGAGAATACAAAGTGGCCAAAGTAGTCCTGACTCATGA 1239 0.4294 MGRCPCFGLGRKAKGKNIKEKEEEKNLKSAGSVSGRSSGRRSEETPTEDTDSSNKAQIFTFRELATATKNFRDETFIGQGGFGTVYKGKIEKTNQIVAVKRLDTTGVQGEKEFLVEVLMLSLLHHANLVNMIGYCAEGDQRLLVYEYMPLGSLESHLHDLSPDKEPLDWNTRMMIAAGSARGLNYLHHEAKPSVIYRDLKSSNILLGEGFHAKLSDFGLAKFGPTGDQSFVATRVMGTQGYCAPEYATSGKLTMRSDIYSFGVVLLELITGRRAYDDTRGPEKHLVDWARPMFRDKRNFPRLADPHLQGHYPGSSLKMAIELASMCLREEPRYRPDAGDIVLALDYLSSKKYVSKVSSTVNIGGMDNGESPKETPMTLAKDSQREQAVAEAKLWGETWRHKRIQSGQSSPDS. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03748 412 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03748 412 FunFam Serine/threonine-protein kinase PBS1 148 361 - -
Seca1g03748 412 CDD STKc_IRAK 77 341 - -
Seca1g03748 412 Gene3D Transferase(Phosphotransferase) domain 1 148 364 - -
Seca1g03748 412 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03748 412 PANTHER OS07G0668900 PROTEIN 22 355 - -
Seca1g03748 412 SUPERFAMILY Protein kinase-like (PK-like) 52 344 IPR011009 -
Seca1g03748 412 MobiDBLite consensus disorder prediction 13 29 - -
Seca1g03748 412 MobiDBLite consensus disorder prediction 1 54 - -
Seca1g03748 412 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Seca1g03748 412 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g03748 412 MobiDBLite consensus disorder prediction 363 384 - -
Seca1g03748 412 FunFam probable serine/threonine-protein kinase RLCKVII 43 147 - -
Seca1g03748 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Seca1g03748 412 Gene3D Phosphorylase Kinase; domain 1 32 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03748 Seca-Chr1 110532500 110539135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03748 6 402 Glycoside Hydrolase AT3G07070 53.735 2.83e-148 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca1g03748 Pkinase 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03748 K13430 - gmx:100809298 632.869