Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03739 ATGGAGGACATCATGAACTATGCTAAGGGTGGGAGTGTTAGATTACCTGTTGGGTACAGGTTTGATCCCACAGATGAGGTTCTTGTTAATTTCTACCTCAAGAGGAAGGTCTATGCTCTGGCTCTTCCTGCTCAAGTCATCCAAGAATTTGATGTTTTCCAAACAGAGCCATGGAAACTCCCAGGAGCAGATAAAAAACTGTTCAAAGAGGGAAGGTACTTTTTTTTCAATACCAAGCTCCATGAGTTTCAGAACATGGATAAGAGGCCTTCTGGGGCAGGAGAATGGAGGGTCATTGAAAAAGGCAAAGAAATTGCCATCCCCAGAAACAATCTGATATTGGGGAAGAGAAACACTCTTGTTTTCTGGGAAGGACAAGGGGCAAATCTCACCAAATCAAGATGGGTGATGCATGAATTTCGCCTTGCATCAACAGCAAATCCATCACGGATGTCTTTCTGGGCTGTGTACAGAGTTTTTCAGAAGAAGGAGGCAAGAAAGGTTAAGGGAAGAGGGTCTAATAGGGAGAATTCCAACAACAGCCATGTTGAGGAAGCTGAAGTTATTGATTTCAGAGAGGGGAATGACAGTACCTCTGGCCCTCCCTCACCCTTTACCCCATGA 624 0.4455 MEDIMNYAKGGSVRLPVGYRFDPTDEVLVNFYLKRKVYALALPAQVIQEFDVFQTEPWKLPGADKKLFKEGRYFFFNTKLHEFQNMDKRPSGAGEWRVIEKGKEIAIPRNNLILGKRNTLVFWEGQGANLTKSRWVMHEFRLASTANPSRMSFWAVYRVFQKKEARKVKGRGSNRENSNNSHVEEAEVIDFREGNDSTSGPPSPFTP. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03739 207 MobiDBLite consensus disorder prediction 166 207 - -
Seca1g03739 207 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Seca1g03739 207 MobiDBLite consensus disorder prediction 166 192 - -
Seca1g03739 207 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Seca1g03739 207 ProSiteProfiles NAC domain profile. 15 162 IPR003441 GO:0003677|GO:0006355
Seca1g03739 207 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
Seca1g03739 207 PANTHER NAC TRANSCRIPTION FACTOR 56 15 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03739 Seca-Chr1 109773113 109774592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03739 3 165 NAC Transcription Factor Family AT5G13180 40.120 2.14e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g03739 NAM 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03739 - - lja:Lj6g3v0227250.1 214.157