Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03729 ATGGCAGACCCTGCAGCTATCTACGACGAGTTCCTGAAGCAGCCACTAAGAGCAGGTGCAAAGAGACCACAACCCCACCCACCACCCTCAACCCGCACCTTCCAATGCCACTTTTGCCACCGCAACTTCTTCACTTCCCAAGCTCTTGGTGGTCATCAGAATGCTCACAAGCTTGAAAGAGCAGCTGCTAGGAGAAGCAATGTCCCTTTTCACCTCAATGCCAATAACGTGTCACCAGCACCATTGTCATTGGACTCTTCTGTCAAGATCACCAAGCCCAAGCCCATGCCTGAACTGGAGCCCGATTGTTTATTCCATCACCCTTACTGGCTTGAAGTTGAGCCCTTCCAGTTTCAGACACATCACCATGTTACAACCACTCTCCCTCTTCCCTTCAATCATCATCATGGTGATGCTTCTTCCACTTCCACCCCTCAACATGTTCTCTTCCATAATGTTGCACCTTATGCTTCTGACCATGTCAACCTCGACCTCACCCTTCACTTGTGA 510 0.5 MADPAAIYDEFLKQPLRAGAKRPQPHPPPSTRTFQCHFCHRNFFTSQALGGHQNAHKLERAAARRSNVPFHLNANNVSPAPLSLDSSVKITKPKPMPELEPDCLFHHPYWLEVEPFQFQTHHHVTTTLPLPFNHHHGDASSTSTPQHVLFHNVAPYASDHVNLDLTLHL. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03729 169 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Seca1g03729 169 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Seca1g03729 169 Gene3D Classic Zinc Finger 21 78 - -
Seca1g03729 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Seca1g03729 169 PANTHER ZINC FINGER PROTEIN JAGGED 24 144 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03729 Seca-Chr1 109249606 109250115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03729 28 119 C2H2 Transcription Factor Family AT5G14010 42.105 3.60e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03729 - - cam:101499960 162.54