Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03713 ATGCCGTTGCCGTGTGACTACTGCGACTCCAAAAGCGCGGTGCTGTATTGCAGAGCAGACTCGGCGAAACTATGCTTAGTGTGCGACCAGCACGTGCACTCCGCTAACGCCCTCTCCCTCAAGCACGTGCGATACCAGATTTGCGAAAACTGTAAAAACGACACCGCTTCGGTTCGATGCTCCACCGACAATCTCCTCCTCTGTAACCGCTGCGACTGGGACGCACACGGAGGCTCCTCTGCTCTCAGCCACCACATCCGCCACCGAATCGAGGGTCTCTCCGGCGTCCCTTCCGTTCCCGAGATCGTCTCTGTCCTCGGCCTCGATTTGAAGCCCGACGACGTCGTTTCGGTGTCTGACTTCGAGGGTCCAGTGGTTCCCGTTTTTCCGTCGTCCAAGAGTCAGAGCTTGACCTGCGGGAAGAATAGGGATGAGGTGTATGAACAGTTGGTGGAAATTGCGAAGAGGAATAGGAACCTGTGTGGGGAAGATGTTGAATTCGAATTCAATGATAGTAGCAACGATGTTGGTGATTTGTTGCTGCAGCAAACTACTCCGTTTACTTCTTTGCTCACGTTGCCTTCGGAATTTGACAATGATTTTAGAAAAAACCATGATTATGGAACTGAAGAAGCAGGGGATCTTGTCTGGAATTGTAATCCCCAATATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAGAAATCAAGAGATTGCAATGAAGCACGAATGGTGATGTTTGATAGTCTAGAAGAAGCTTCCCTATCGATTCCAAAATCATTGCAAGATATGCACAATATAAATTGCTCTACAATTGATGATATTCTATCAAGAAATGCATGTGCAAGAAGTTATAACCTACTACTTGTCACTCCTTGTAAAGTGAGAATCATTGGATTGGAATTGTTTGTGGGAAGGGAATGTGATGAATTGGTTGAATGGATGATGCAAAGGCATACTGACTGTGTATCATTGATTCAGGCTCTCTAA 990 0.4717 MPLPCDYCDSKSAVLYCRADSAKLCLVCDQHVHSANALSLKHVRYQICENCKNDTASVRCSTDNLLLCNRCDWDAHGGSSALSHHIRHRIEGLSGVPSVPEIVSVLGLDLKPDDVVSVSDFEGPVVPVFPSSKSQSLTCGKNRDEVYEQLVEIAKRNRNLCGEDVEFEFNDSSNDVGDLLLQQTTPFTSLLTLPSEFDNDFRKNHDYGTEEAGDLVWNCNPQYQPPQVWDFQLQKSRDCNEARMVMFDSLEEASLSIPKSLQDMHNINCSTIDDILSRNACARSYNLLLVTPCKVRIIGLELFVGRECDELVEWMMQRHTDCVSLIQAL. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03713 329 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca1g03713 329 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Seca1g03713 329 CDD Bbox1_BBX-like 4 47 - -
Seca1g03713 329 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca1g03713 329 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 263 - -
Seca1g03713 329 Pfam B-box zinc finger 44 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03713 Seca-Chr1 108752183 108755724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03713 3 241 C2C2-CO-like Transcription Factor Family AT2G33500 40.840 2.48e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca1g03713 zf-B_box 6.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03713 - - aprc:113862926 328.176