Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g03693 ATGATGATGGATCAGCGACAGCGAGAGAAGAAGCTCCTTCACAAAACCGAGGCCTGTGCTTTTATGGCAGGTGTTGGGGCTGAGCTTCGTTTTGTCACCATGTCAGGGGACAACAACAACAACAACAAGAGCAACAAGATAACTACCACTACTACTAGTACTAACGGGTCGGGTCGGATCCTTGATAATGGTCTTGGCCTTGTTAATGCGGTTACTACCTCCTTCGGAACTGTTCAGAGGAAGAAAAGGATGGCAAGACAGAGAAGATCCTCCCACACATTGATGCACCATTCCCCTTCTTCCAAGCTCAACCCTCCTCCTCCTCCTCCTTCAACAACTTCCTCGCACGTGCCATTCTCCTCTTCTCTCCCTTCCGCACGTGAAATTGATCATACAAGGTTGAGATTCCTTTTCCAAAAGGAGCTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCTGAAGCATTCCTTCCTGCCCTTGACTCAAAGGAAGGAATTCTTATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAATACAGATTTTGGCCTAACAACAATAGCAGGATGTATGTACTTGAAAACACTGGAGACTTTGTTAACACACATGGCCTTCAATTTGGAGACTCCATTATGGTCTACCAAGATAGTCAAAACCATAACTATGTCATTCAGGCCAAGAAAGCTTCTGATCATGATGAATTTATGGAAGAAACCAGTGATACTGCCAATGATATCTTCCTTAATGATTATGAAGTGATCAAACCTGATTGCTTCAATATAACCTATCCTGCAATGAATGATACAGACATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCTCTTGATTTCTTGGGTGGATCAATGACTAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGTTCTGTTGAGAATTTGTCCCTTGATGACTTCTATTAA 981 0.4241 MMMDQRQREKKLLHKTEACAFMAGVGAELRFVTMSGDNNNNNKSNKITTTTTSTNGSGRILDNGLGLVNAVTTSFGTVQRKKRMARQRRSSHTLMHHSPSSKLNPPPPPPSTTSSHVPFSSSLPSAREIDHTRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALDSKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLQFGDSIMVYQDSQNHNYVIQAKKASDHDEFMEETSDTANDIFLNDYEVIKPDCFNITYPAMNDTDMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g03693 326 SUPERFAMILY DNA-binding pseudobarrel domain 136 234 IPR015300 -
Seca1g03693 326 SMART B3_2 138 240 IPR003340 GO:0003677
Seca1g03693 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 247 IPR044800 GO:0003700
Seca1g03693 326 MobiDBLite consensus disorder prediction 81 95 - -
Seca1g03693 326 CDD B3_DNA 136 238 IPR003340 GO:0003677
Seca1g03693 326 FunFam B3 domain-containing transcription factor FUS3 134 249 - -
Seca1g03693 326 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Seca1g03693 326 Gene3D - 134 253 IPR015300 -
Seca1g03693 326 Pfam B3 DNA binding domain 138 235 IPR003340 GO:0003677
Seca1g03693 326 MobiDBLite consensus disorder prediction 78 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g03693 Seca-Chr1 108197265 108200173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g03693 34 326 B3 DNA Binding Superfamily AT3G26790 50.459 1.31e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g03693 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g03693 K09287 - gmx:100813055 475.322